BAC Information

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BAC

Clone NameMSMg01-067D15
Chromosome4 (Build37)
Map Location 51,457,577 - 51,457,868
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067D15.T7 (MSMg01no067_d15.b1)MSMg01-067D15.TJ (MSMg01no067_d15.g1)
ACCAG292013AG292014
length704698
length of high quality
(start - end)
324 (36 - 359)96 (126 - 221)
definitionCHROMAT_FILE: MSMg01no067_d15.b1 PHD_FILE: MSMg01no067_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:16 2005CHROMAT_FILE: MSMg01no067_d15.g1 PHD_FILE: MSMg01no067_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTAAAATTGCGGCGCTAAACGACTCCTATAGGCAGAGGATCCGCGGA
ATTCTGATATTTCCACTTCTTCTGAGATAGGGGCAACAACAGGGATAGTG
TCAGTTAACTTTTCTCTGCTTATGATTTTAGAATATAGTTATATAATGAT
ATAATTTGAATATTGATGAAGATGAGGTTCTACTTCATAATATATTCAAA
TAGATACACTGATAAATGATAAAATTAGCTTTCACCACAACTTTTTTCTC
TTACCAAATTCTTTCCCCAAACTTGTCCTTATTCAAATTCATAGCAACCT
CATTTTGTTGGTAGGGTATATATTACTGCTTTCATGATTCTGAAGCTAGA
AGCTATATTTTTTATCAGCCCCCCCCACCGTATAGGTATACAACTAGCTC
TTATAGTGAGAATATAATATTCATTGCATCTGATGTTTTACATTCGTTTT
TGAATAATATAAATTGTTATATGGAAAACAGTGAGTAAAACAAGTTTTCT
ACCCTACATATCTATATCTCAATACTGTGCCTTCCATTTCAGCTCACATT
GGCTTTCTGCTTTTTCATATTTCCTAATAAGCTTTCAAGATGGAAGATCT
AACTTTGATTGAATAGAAATTATTTGCCTTTTACTGGTGATAGTTGGCCC
TATTAACCGGTAAAGAAACCTAGGCATTAAAGGTTGCATACCCCCACAAA
TATA
ACACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCACA
TAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGTCGTGCATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTTGTGAGATTGCAGGTTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCATATTATTGGACATAGTATTACCGGAGGATCCA
GCAATACCTTTTTTGTTCCCCCCCCCCCCCACGCTTCAACTGGTAAGAAG
GACACATGTTCCACTATCTTCATAGAAAAAATATTTATAATTAGCGGACG
CTGTAACTAACCCAGATGCTCCTTACCAGAGTATTTGTACACTTATTACG
TGTTTCTTCCCCCCCATGTTTTACTACTCTCCTATTACAAAGCATGATTT
TATGAATCCCCTAGTTTTATGTACGGACCCGCATTATCACATCCCGATTG
ACGCATCCCATTTTTACCGTATTCCCCCCCTTTGTCCTTTCTCCTTCGCG
CTTTTATCCCTTCACCTATTTTTCCCTTGCACCTTTATTTCCCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_d15.b1 MSMg01no067_d15.b1 CHROMAT_FILE:
MSMg01no067_d15.b1 PHD_FILE: MSMg01no067_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:16 2005
         (324 letters)



>mm_chr4_51457347_51458070
          Length = 724

 Score =  482 bits (249), Expect = e-140
 Identities = 282/293 (96%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 31  cttcttctgagataggggcaacaacagggatagtgtcagttaacttttctctgcttatga 90
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 231 cttcttctgagataggggcaacaacagggatagtgtcagttaacttttatctgcttatga 290

                                                                       
Query: 91  ttttagaatatagttatat-aatgatataatttgaatattgatgaagatgaggttctact 149
           |||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||
Sbjct: 291 ttttagaatatagtta-attaacgatataatttgaatattgatgaagatgaggtcctact 349

                                                                       
Query: 150 tcataatatattcaaatagatacactgataaatgataaaattagctttcaccacaacttt 209
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcataatatattcaaatagacacactgataaatgataaaattagctttcaccacaacttt 409

                                                                       
Query: 210 tttctcttaccaaattctttccccaaacttgtccttattcaaattcatagcaacctcatt 269
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 410 tttctcttaacaaattctttccccaaacttgtgcttattcaaattcatagcaacctcatt 469

                                                                
Query: 270 ttgttggtagggtatatattactgctttcatgattctgaagctagaagctata 322
           |||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct: 470 ttgttggtagggtagatattactgctctcatgattctgaggctagaagctata 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)