BAC Information

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BAC

Clone NameMSMg01-067N23
Chromosome4 (Build37)
Map Location 49,716,584 - 49,716,882
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N23.T7 (MSMg01no067_n23.b1)MSMg01-067N23.TJ (MSMg01no067_n23.g1)
ACCAG292503AG292504
length707703
length of high quality
(start - end)
294 (73 - 366)248 (79 - 326)
definitionCHROMAT_FILE: MSMg01no067_n23.b1 PHD_FILE: MSMg01no067_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:06 2005CHROMAT_FILE: MSMg01no067_n23.g1 PHD_FILE: MSMg01no067_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGATCCGCG
GAATTCATTAATATGATTATTTTTGAGAGGTGTATATATGGGGACTATTT
ATATTAATCCTAGATATGCCCTTCTGTCTCCTGGTTGTCAAAATAGACTC
TTTTTCTATTTCTTCCCCCATGTATATGGAATGAAAACTCTGATACCATG
AGCCAAAGTATATAACTTCTCCATCAACTAACCCTCTCTAGAAGTGCCTT
CACATACACACCCAATGGTGTACTTTCCTAGTCTCCTAGGCACTGCTCAG
TCCAATCAAGTTGACAATTAAGATTCACCATCACATGCAGTTTCACTGGG
AAAGATGGCTAGGTAATCTTAGACCCGCCCCCCCGGGGGAAGACGGTTGG
CACGTTCTGTACCTGTCTTCTCCAAAAAAAAAAAAAAAAACACCCTGCGT
GGGTTTATTCTCCCTCCCCTTTCTCTTTTATTACTACCGTTTTTTTTTGT
TATAACACGTAACATTTGTTTTTTTTCTTTCATCAATATTTTACAGTTCG
CCCTGTCTTGGTCTGTTTTTATCCTCTTCTTTATTTTTCTCCCCAATCCA
CTTTTGTTCCCTCCTTAGACTCTATTTCTTTCCCTCTTTTACTTTTTTAC
TTGCTTCGTTTCGATTTTTAGCGTCTTTTATTTTTTTCTTCTTCGCCGCC
TTTATCT
NAAACGATGCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACTTAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGTTTTTATCCCCCCCCCCCGCCCCAATAGGTA
AGAAGGACATATGCTCCACTATGTTCATAGAAAAATTAAATATAATAGCC
AGAGGCTGGATAGAACCTATATGCTCCTCCCCATATGAATGGATACTGAT
TATGTGGTACATTTACTTATTTGGAGTACTACTCATCCATTAACAAGAAT
GATTTTATGAATTTCCTAGCCAAATGGATGGACCTGTACGGCATCATTCT
GAGTGATGTTATTTTTTCTTGATTACCTTCCCCTTTATTGTTTTCCCTGA
CAATTGTTATACTAATCCCCCTATCTAGGATTCCCACCTATTTTTTTCAC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n23.b1 MSMg01no067_n23.b1 CHROMAT_FILE:
MSMg01no067_n23.b1 PHD_FILE: MSMg01no067_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:06 2005
         (294 letters)



>mm_chr4_49716490_49717183
          Length = 694

 Score =  543 bits (281), Expect = e-159
 Identities = 291/299 (97%), Gaps = 8/299 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagaggtgtatatatggggactatttatattaatcctaga--------tatgcccttc 52
           ||||||||||||||||||||||||||||||||||||||||||        ||||||||||
Sbjct: 393 ttgagaggtgtatatatggggactatttatattaatcctagatattcttgtatgcccttc 334

                                                                       
Query: 53  tgtctcctggttgtcaaaatagactctttttctatttcttcccccatgtatatggaatga 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgtctcctggttgtcaaaatagactctttttctatttcttcccccatgtatatggaatga 274

                                                                       
Query: 113 aaactctgataccatgagccaaagtatataacttctccatcaactaaccctctctagaag 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaactctgataccatgagccaaagtatataacttctccatcaactaaccctctctagaag 214

                                                                       
Query: 173 tgccttcacatacacacccaatggtgtactttcctagtctcctaggcactgctcagtcca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgccttcacatacacacccaatggtgtactttcctagtctcctaggcactgctcagtcca 154

                                                                      
Query: 233 atcaagttgacaattaagattcaccatcacatgcagtttcactgggaaagatggctagg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atcaagttgacaattaagattcaccatcacatgcagtttcactgggaaagatggctagg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)