Query= MSMg01no067_o18.b1 MSMg01no067_o18.b1 CHROMAT_FILE:
MSMg01no067_o18.b1 PHD_FILE: MSMg01no067_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:10 2005
(314 letters)
>mm_chr4_70146733_70147446
Length = 714
Score = 567 bits (293), Expect = e-166
Identities = 305/309 (98%)
Strand = Plus / Plus
Query: 4 ggaattctttatatttttgtgacttactaatctatatatatagagttgctatgaagatta 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattctttatatttttgtgacttactaatctctatatatagagttgctatgaagatta 263
Query: 64 agaaaaactttgaacctactaaaaatcataaacattcatcattgcttcatttcaagttat 123
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaaaactttgaaattactaaaaatcataaacattcatcattgcttcatttcaagttat 323
Query: 124 aaacttctcaatttcttttctatattttaatataagtgcattatgtaatattgtacaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaacttctcaatttcttttctatattttaatataagtgcattatgtaatattgtacaata 383
Query: 184 acacaatatggtttataaaacatctaaaatatctattggtaaaatctaaatcactttacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacaatatggtttataaaacatctaaaatatctattggtaaaatctaaatcactttacc 443
Query: 244 aatttgtttttgttttgttttgttttgtttttcatgtcaggatttctctgcatcaccctg 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatttgttttttttttgttttgttttgtttttcatgtcaggatttctctgcatcaccctg 503
Query: 304 gctgtcctg 312
|||||||||
Sbjct: 504 gctgtcctg 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_o18.g1 MSMg01no067_o18.g1 CHROMAT_FILE:
MSMg01no067_o18.g1 PHD_FILE: MSMg01no067_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:10 2005
(282 letters)
>mm_chr4_70249356_70250036
Length = 681
Score = 484 bits (250), Expect = e-141
Identities = 274/282 (97%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 1 tttgttcagttctgagccccattttttaatggggttatttgattttcccaagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 597 tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 538
Query: 61 cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaccca 478
Query: 121 gttacttttttagtgcctctatttgtaatggaatgacacacttatcagttcttacatctc 180
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 477 gttactttcttagtgcctctatttgtaatggaatgacacacatatcagttcttacatctg 418
Query: 181 aattaatcacagattgagaaagcatccataagacatacaagtgcacctccagggagggtg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 417 aattaatcacagattgagaaagcatccataggacatacaagtgcacctccagggagggtg 358
Query: 241 aatgattattccattccatagagaacattggcaacaaatgca 282
|||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 357 aatgatcattccat-ccatagagaacattggcaacaaatgca 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
