BAC Information

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BAC

Clone NameMSMg01-068J04
Chromosome4 (Build37)
Map Location 94,304,187 - 94,304,370
singlet/doubletsinglet
Overlap geneLrrc19
Upstream gene5830433M19Rik, Plaa, LOC667250
Downstream geneIft74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J04.T7 (MSMg01no068_j04.b1)MSMg01-068J04.TJ (MSMg01no068_j04.g1)
ACCAG293036AG293037
length692796
length of high quality
(start - end)
185 (141 - 325)89 (139 - 227)
definitionCHROMAT_FILE: MSMg01no068_j04.b1 PHD_FILE: MSMg01no068_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:02 2005CHROMAT_FILE: MSMg01no068_j04.g1 PHD_FILE: MSMg01no068_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAAACAATCAAATTTGCGGCGCTCTACGACTCCTATAGTTTCCGATCG
GCGGAANNACAGAANTAATGACGAGATAACGAAACTNAAAAGCAAAATTT
CCTCAAAAGNTTGTAGCAATTTTTTTCATCGATATAGGGATTTGGAATAA
TCCCTACTAATCACTACTGCATTTGACAGTGGTTGTTAGGAAGAATTCCA
TATACAATTGCCATGATTAATATTACAATGGCTCCTAAAATGGGCATCAT
AACAATTATGTTTTTTCTTTAAAAGACCAAACATTTCTCTATTTCTTTTG
GGAGATTATTTTTAAAATTATTGTTTTTTTTATTTGAGAANATTTAAGGA
ACCCACACACATCTATTTTTTTTTCACCCCCCACAGCAATGTTTCCCAAA
TTGATTTGTAGAACACTGATTTTCTATAATGACAAAAACAACCATTTATA
GAGGAAGAAAAAGGCAACTGGTCAAATTACTGAAGGAATCTAAATCTAAA
CATAGTTAAAGATTTTTTTCCTTTAGTACTTATAGATTTTACTAAGTTTA
GGTGTTCTCTGATAACTCAAGAGTACAGTACTAAGTTTTTGAAGGGCATC
TATATAGCATGTTCAGGTCCCTGGGTTCATTTGTCTCTCTCTCCCCCCCC
CCCTCTCTCTCTTTCTCTCTTTCTCTTTCTCTCTCCTGGGTC
TCTCTTCTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAATAAGAAATGG
TCTGTGTGAAGATGGCCTAGCCAGCCATCATTGGCCAGAGAGGCCCATTG
GTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAA
GTGGGAGTGGGTGGGTAGGGGAGTTGGTCTTCCCCTCTCCTTTTTTTCTT
TTTTTCTCGCCCTTTTCTTTCTCCTTCCTTTCTTCTTCTTTCCTTCCCTT
CCTCCTTTTTCCTTTCTTCTTCTCTCTTTACCTCCTTCTCTTTTTTTTTC
TTTGTTTGTTTTCGCCGCTTCTTCCTGTCGCCTTATTTTTTTTTTTTCCC
CCCCCCCCCTCCTTGTGGTTGTTTCCTCCGTGTGTTTCCGCTCTGCTCCT
TCCCCTCACCTAAACAAAAATATATCTTCCTTTCTTGGTGTGTTGTCTCT
TAACTACCACTTTTTCTTTCCTCCTTCAATCTTCTTTTTTCTTCGCTTCT
CTATGTTTTTTATTCTATTCTTCATTCCATACTTTTTTCTTTTCATTCTT
CCCTTCCTCCTCTGTCGTCTCCCCCTTTATGTTTTATGTCTCTTCTGCCT
TTTGATCTGTTTTCTGCCTCTTCTTCTCTTTTTGTTCTGGGTGTTCCCTT
ATCCTCTCTCTGCGTCCTCTTCTTCGTCTTGCTATTCCTCCCCCTCCATG
TTACNCTTCCTGCCTGCCGTCCCTCATTTTTTATCACTACCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j04.b1 MSMg01no068_j04.b1 CHROMAT_FILE:
MSMg01no068_j04.b1 PHD_FILE: MSMg01no068_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:02 2005
         (185 letters)



>mm_chr4_94303987_94304571
          Length = 585

 Score =  302 bits (156), Expect = 1e-86
 Identities = 177/184 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggaataatccctactaatcactactgcatttgacagtggttgttaggaagaattcca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttggaataatccctactaaccactactgcatttgacagtggttgttaggaagaattcca 325

                                                                       
Query: 61  tatacaattgccatgattaatattacaatggctcctaaaatgggcatcataacaattatg 120
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatacaactgccatgattgatattacaatggctcctaaaatgggcatcataacaattatg 265

                                                                       
Query: 121 ttttttctttaaaagaccaaacatttctctatttcttttgggagattatttttaaaatta 180
             ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattttctttaaaagactaaacgtttctctatttcttttgggagattatttttaaaatta 205

               
Query: 181 ttgt 184
           ||||
Sbjct: 204 ttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)