BAC Information

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BAC

Clone NameMSMg01-068K18
Chromosome4 (Build37)
Map Location 96,503,635 - 96,504,052
singlet/doubletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K18.T7 (MSMg01no068_k18.b1)MSMg01-068K18.TJ (MSMg01no068_k18.g1)
ACCAG293111AG293112
length741722
length of high quality
(start - end)
---418 (74 - 491)
definitionCHROMAT_FILE: MSMg01no068_k18.b1 PHD_FILE: MSMg01no068_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:10 2005CHROMAT_FILE: MSMg01no068_k18.g1 PHD_FILE: MSMg01no068_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGTACCTTTCCACAGGTTTATTTAGATGACAATAGTACATATTC
CTAATACCATGTATGGTACAGACTGCCCAAACAATACTTACATATCTTAT
GCTTAATCTAAAGCAGACCTTATATTGTCATATTTTCAATGAGAGGACAG
TTATTTTTGCGCTTTTGAGATATTTAGGTCTACATTCTTCTACTTTTACC
TTGTTTGTTCGCCTCATTTCAATGATTGCTGTATTATTATTATTACCATT
ATTATGCTCAATGCATATTGTGTACGTGTTTATCTGTGAGTGAGACTTTG
AGGAACTTATGTTATTACTTTCCACCTAATACTTTGAAGTAGGAACTGCC
ACTGATCTATTTGCCTGACTCCCTCCCAGCAAGGCCCAATATCTCGCCTG
TCTCCATCCTTCACATGCTGGACTTACAGGTGCATACCACTACATCTGAC
TTTTATGCGAGTGCTGGATATCCATACTCGTTGTCTCGCTGCTTATGTCA
TGTGCACTTTACCGATTGAGCCACATCGCCAGACCTGCAATACTATTATT
AGCCAATTCTTCCCACTGCCTCAGCGAAAAGTGTTACTATACCATTTGGG
GTCAAATAGAATCTCCCTTTGTCATACTTGGGGAATTTAAACAAAACAAA
TAGTTCTTCTAATTGGTCCCGGTATGGTTTCAGAATTGTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGCACCTGTGATTTTATTATTTATT
TATTGCTTGATTATTTTTTTGTTACTAAACCTCTTTTTTCTAGAAAAAAT
AATTAGTTGCACAACCTGGATGCAGGAAATAGAAGTTTAATTTAGGATAT
ATTATGTCAAACATTAGGAATTTAAGAATAAAGAGTAATAGCCAAGGCTT
AGTTTTTTATTCTAGTACAGTCTGTCTAAGAAGAGAAAGTAGAAAGTCCT
TTTTAACCCTGTCAATAAACACAACTGATCTGCACATCAATATTTCTATG
TGGAGTATTACTACACTGAGTTGTACAAGGACTTCTAAACAGTTAACCAA
TTAAGAAAGCTGTTACACAAACTAATGTTGTTAGTAATAGCACATAGTAT
CCTTTTCTAGGAGGAGGTAAAGTAACTTCCCAACTGCAAAGTAAACCAAA
GATACCTTGTGGGTTAATGCAACCCAATTAATTTACAAGATTGTTCCTCT
AGGATCTATACTTTTATTCATTTACATTAACTGACTACTCCAGAATACCA
CTTCTTAAAGAAAACATACCCCAAAAATAATACTTGTAAACTTCATCCAT
AAACTTTCAGTACCAAAATAAAAGTTACTATCCCAGGTAAATGGGATATT
TTGGGCCTGTCTCTGTACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k18.g1 MSMg01no068_k18.g1 CHROMAT_FILE:
MSMg01no068_k18.g1 PHD_FILE: MSMg01no068_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:10 2005
         (418 letters)



>mm_chr4_96503435_96504252
          Length = 818

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagcacctgtgattttattatttatttattgcttgattatttttttgttactaaacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 618 caagcacctgtgattttattatttatttattgcttgattatttttttgttaataaacctc 559

                                                                       
Query: 61  ttttttctagaaaaaataattagttgcacaacctggatgcaggaaatagaagtttaattt 120
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 558 ttttttctagaaaaaataataagttgcacaacctggacgcaggaaatagaagtttaattt 499

                                                                       
Query: 121 aggatatattatgtcaaacattaggaatttaagaataaagagtaatagccaaggcttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aggatatattatgtcaaacattaggaatttaagaataaagagtaatagccaaggcttagt 439

                                                                       
Query: 181 tttttattctagtacagtctgtctaagaagagaaagtagaaagtcctttttaaccctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttttattctagtacagtctgtctaagaagagaaagtagaaagtcctttttaaccctgtc 379

                                                                       
Query: 241 aataaacacaactgatctgcacatcaatatttctatgtggagtattactacactgagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aataaacacaactgatctgcacatcaatatttctatgtggagtattactacactgagttg 319

                                                                       
Query: 301 tacaaggacttctaaacagttaaccaattaagaaagctgttacacaaactaatgttgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacaaggacttctaaacagttaaccaattaagaaagctgttacacaaactaatgttgtta 259

                                                                     
Query: 361 gtaatagcacatagtatccttttctaggaggaggtaaagtaacttcccaactgcaaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtaatagcacatagtatccttttctaggaggaggtaaagtaacttcccaactgcaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)