BAC Information

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BAC

Clone NameMSMg01-068N24
Chromosome4 (Build37)
Map Location 50,067,858 - 50,068,047
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N24.T7 (MSMg01no068_n24.b1)MSMg01-068N24.TJ (MSMg01no068_n24.g1)
ACCAG293267AG293268
length725722
length of high quality
(start - end)
192 (134 - 325)295 (71 - 365)
definitionCHROMAT_FILE: MSMg01no068_n24.b1 PHD_FILE: MSMg01no068_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:27 2005CHROMAT_FILE: MSMg01no068_n24.g1 PHD_FILE: MSMg01no068_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTACACGACTACTATAGGGTGCGGTACNGCGGAA
TCANCAGCTTATATTTCCANGAGTAATTTATTGAAACAATCTAAAGATAC
CTATCTGTTCAAAGATGCTATTAACTCGTTAGACTCATTAAAATGTTGAT
AAAAGCTGAAAGTTATCTTAAGAAAAGGTAGTCTTTGTTCTTTAAATTTA
CCTAAGATAATTTTACTAAGGGTTTGTGTCTCATTTATTGCTGAATGCAT
GTTTTACTCTTTTCAAAATTCATTAGTTTCAATTAGAAGAAAAGTAAAAT
CTTGAATTGTTAGCTGTTTTTTTATTTTTTTTTTTAGCACATAAATTGTG
CATCACAACAACGTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTAAATTGT
GTGAATGCCTGTCAGTATGTGAATGCATGCACAANTGACTAAAAAGCCTA
TGTGGGCGAGAGGATAGGACCATATCCCCTAGTGCTAGAACACTGACACA
CACACTCACTCGTATAATACAGACTGACACGACCATGTTATCGTATACAC
ATGTATAACTTACTTGCTTAGGATAGGCTCAGAATTGAAGAGAGAAATAT
TGTGATAGATTCCGATACACTAATTCAGGCATTGGTCTAATGATTACCTA
ATTCAATGAAGCTCTGTAATTTTATTTTTTATATTCTGGAATAAAATAGC
TACAAGTGTTCTTACCTCAAACCGG
TACATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCGTGTCATTCATCTTGGAAGATTTTACCTTTGATGAGT
ATGAAGTGCCCTTCCTTGTCTTTTTTGATAACTTTGGGTTGGACGTTGAT
TTTATTTGATATTAGAATGGCTACTCCATCTTGTTTCCTGGGAACAAGCT
TGGAAAATTTTTTTCCAGCCTTTTAATCCGAGGTCTTTTTCTCTGAGGTG
GTTTTCCCGTATGCAGCAAAATGTTGGGTCCTGTTTGTGTAGCCAGTCTG
TTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTGATATTAAGAAAT
ATTAAGGAAAAGTAATTGTTGTTTCCTGCCACCCCCCGCCGTTATAGCTT
GGATTCTCTTCTTGAGGCTATATTCTTTTATGTTTGAAACAGAATTACTT
CCTTGCTTCTTCTAGACCATAATTTCCCATCTTGTGTTGGAATTTTCCCT
TTATTATCTTTTGAAGGGCTGGATTCTTGTAAAGATACTGTGTGAATTTG
GTTTTGTCATGGAATACTTTGGCTTCTCCATCTATGATAATTGAGAGCTT
TGCTGGGTATAGTATCCTGAACTGATCACTGTGTTCTCATAGGGCGTCTT
TTCAGGATTTTCTGGGTTTCTAAGCTTTGCGGAGAAACTTGTTGAATTCC
TAATAAGTATGCCTCTATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n24.b1 MSMg01no068_n24.b1 CHROMAT_FILE:
MSMg01no068_n24.b1 PHD_FILE: MSMg01no068_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:27 2005
         (192 letters)



>mm_chr4_50067658_50068249
          Length = 592

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcattaaaatgttgataaaagctgaaagttatcttaagaaaaggtagtctttgttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctcattaaaatgttgataaaagctgaaagttatcttaagaaaaggtagtctttgttcttt 331

                                                                       
Query: 61  aaatttacctaagataattttactaagggtttgtgtctcatttattgctgaatgcatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatttacctaagataattttactaagggtttgtgtctcatttattgctgaatgcatgtt 271

                                                                       
Query: 121 ttactcttttcaaaattcattagtttcaattagaagaaaagtaaaatcttgaattgttag 180
           |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttacacctttcaaatttcattagtttcaattagaagaaaagtaaaatcttgaattgttag 211

                     
Query: 181 ctgttttttt 190
           ||||||||||
Sbjct: 210 ctgttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)