BAC Information

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BAC

Clone NameMSMg01-069D15
Chromosome4 (Build37)
Map Location 37,861,340 - 37,861,938
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448, LOC665520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D15.T7 (MSMg01no069_d15.b1)MSMg01-069D15.TJ (MSMg01no069_d15.g1)
ACCAG293533AG293534
length685694
length of high quality
(start - end)
499 (74 - 572)599 (73 - 671)
definitionCHROMAT_FILE: MSMg01no069_d15.b1 PHD_FILE: MSMg01no069_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:55 2005CHROMAT_FILE: MSMg01no069_d15.g1 PHD_FILE: MSMg01no069_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGGATCCGCGGA
ATTCTCAAATTCCCCTGGAAAGAAAAAACCCAGAGTAGCACAAATAATAC
TTAACAATAAAAGAACGGCTGGGGGAATCACCATCCCTGATCTCAAGCTT
TACTACAGAGCAATGGTGATAAAAAGTCTATGGTATTGCTACAGTGACAG
ACACGTTGATCGATTGAACAGAATTGAAGACCCATAAATAAGGCCACACA
CTTATGAACACTTAATCTTTGACAAAGAAGGCAATAATGTACAATGGAAA
ACAGAAAGCATCTTCATTAAATGGTGCTGGTCTAACTGGCAGTCTGTATT
TAGACAAATTAAAATAGACCCATATTTTCACCTTGCACAAAGCTCAAGTC
CAAGTGTGTCAAAGAACTCAATATAAAACAAGATACTCTGAGTATAATAG
AATAGAAAGTGGGAAAGAGCTTTGTACTCACTGGCATATGGGAAAATTTT
CTAAACAGAACTCCATTCTATGAACAAGAATTGATATGTTGGACCTTATG
AAACTGGAAAGCTTCTGTAAGGCAAAGGATAAAGTCAATAAAATAAATTG
GCAAACTACAGATTGGGAGAAAGTCTTCACTTATCCCACATCCAATAGAA
GGTTAATATCCAAAATATATAAAGAACTCAAGAAG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCAGAAGTTAACTGAAGCCACATTGA
ATCAGTCGTCTTGAAAGATTAGATAGGAAGGAGGGTATACGCTTTCAGGC
CTAGGGCTAGGGGTAGCTAGAACAGAGAAAGAAACATTCTAGGATCAGCC
TAAGCCATGCAGTCACAGGACAAAGGTACAGCTCCTTTCTCATCTCTTCA
TTCATCGAAATAAGGATAACATGTGCAGTTGTTAAACCATCTGGGCATAA
TTGTATGACAGTATTGCTATTGTGATGTTCTCATTCCCATGTACACCTCC
CTTCTGTGGTTAGCTTTTTAATGTGAATCAGATTTGACTGTACATCACAG
GAAATACCTGCTTCCTTCATTTTATAGGTATCACACTAACTGTTTTATCA
TCTAACTTAAGGTGAAAAAAAATTAAACATTAACAACCTCACATAAAGAA
TGTGGCATATTCTAAAATGTGTATAAAATTATTAAATCATATTGCCGTAA
TTATCTCAAAACAAATTTCTAATATTTTCTTTAAAAGTGAAAATGCTAAA
CTTTTGTTAATCAATACAGCCTGTCAGCAGCATATGTGATTTAGAAATAA
AATTGAAATATATTTTGAGCCAGAAATATGCTGCAGTGCTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d15.g1 MSMg01no069_d15.g1 CHROMAT_FILE:
MSMg01no069_d15.g1 PHD_FILE: MSMg01no069_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:55 2005
         (599 letters)



>mm_chr4_37861140_37862138
          Length = 999

 Score = 1067 bits (552), Expect = 0.0
 Identities = 588/600 (98%), Gaps = 2/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcagaagttaactgaagccacattgaatcagtcgtcttgaaagattagataggaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagaagttaactgaagccacattgaatcagtcgtcttgaaagattagataggaagga 260

                                                                       
Query: 61  gggtatacgctttcaggcctagggctaggggtagctagaacagagaaagaaacattctag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtataagctttcaggcctagggctaggggtagctagaacagagaaagaaacattctag 320

                                                                       
Query: 121 gatcagcctaagccatgcagtcacaggacaaaggtacagctcctttctcatctcttcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcagcctaagccatgcagtcacaggacaaaggtacagctcctttctcatctcttcatt 380

                                                                       
Query: 181 catcgaaataaggataacatgtgcagttgttaaaccatctgggcataattgtatgacagt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcgaaataaggacaacatgtgcagttgttaaaccatctgggcataattgtatgacagt 440

                                                                       
Query: 241 attgctattgtgatgttctcattcccatgtacacctcccttctgtggttagctttttaat 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| 
Sbjct: 441 attgctattgtgatgttctcattcccatgtacacctcccttcggtggttag-tttttaac 499

                                                                       
Query: 301 gtgaatcagatttgactgtacatcacaggaaatacctgcttccttcattttataggtatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgaatcagatttgactgtacatcacaggaaatacctgcttccttcattttataggtatc 559

                                                                       
Query: 361 acactaactgttttatcatctaacttaaggtgaaaaaaaattaaacattaacaacctcac 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcactaactgttttatcatctaacttaaggtgaaaaaaaattaaacattaacaacctcac 619

                                                                       
Query: 421 ataaagaatgtggcatattctaaaatgtgtataaaa-ttattaaatcatattgccgtaat 479
           ||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 620 ataaagaatgtggtatattctaaaatgtgtataaaaattattaagtcatattgtcgtaat 679

                                                                       
Query: 480 tatctcaaaacaaatttctaatattttctttaaaagtgaaaatgctaaacttttgttaat 539
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 tatctcaaaacaaatttctaatattttctttgaaagtgaaaatgctaaacttttgttaat 739

                                                                       
Query: 540 caatacagcctgtcagcagcatatgtgatttagaaataaaattgaaatatattttgagcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 740 caatacagcctgtcagcagcatatgtgatttagaaataaaattgaaatagattttgagcc 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)