BAC Information

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BAC

Clone NameMSMg01-069O07
Chromosome4 (Build37)
Map Location 36,901,746 - 36,902,051
singlet/doubletsinglet
Overlap geneLOC100042132
Upstream genenone
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O07.T7 (MSMg01no069_o07.b1)MSMg01-069O07.TJ (MSMg01no069_o07.g1)
ACCAG294044AG294045
length673693
length of high quality
(start - end)
318 (22 - 339)279 (73 - 351)
definitionCHROMAT_FILE: MSMg01no069_o07.b1 PHD_FILE: MSMg01no069_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:46 2005CHROMAT_FILE: MSMg01no069_o07.g1 PHD_FILE: MSMg01no069_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCCATGGAGACAA
ACCTGGTGATAATGGAGTGACAAGTAACTGTTTTGCCATGTGATTTGTGT
ACATCAATTTAGTGATGCTCTGTGTTCTCAGATGACAGGAAAACTGATGC
TTATGCAAATTTGTCAGAGGTAATGAAGCTATTTTGTCATAAATAAGTAC
GCATGGAACCTATGCCCACTCTATTATGAAGTCTTTCCTTTTAAATGTCT
TGTTCATTTCTGTCATTCAGGAACAAACATTTGTGGTTATTCAGACTTAT
TTGGGGACCATTGTATTATATTTAAATTTAGACTATGGTGTTTTTTGTTC
CCCACCCCCCGCCCAATTTCCTATTCCAGTTTAAAACATGACCATCATTT
CTTGCCATATAAAACACTCAGAATATGAGATGCTAAGGTGTCTACTGAAT
AGATTAGGTCTCACGTTACAATGTCTTTATCGTTATTCGTAACTTTTCAT
TGTTTATTTTCATCTTGCTATCCATGTGCAAAAATGTATAAAGCAACTCT
ATTTTTGCATTTTCATCATGTTAATACATTTTAAACATGCCGTCCTTACG
ATGACTTCTCGATCAATCCATGTCTCCTTTAACTTGAGGCTTTCTTTCGT
TACCCTTGTCTCCTTAAAATCTT
GATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACATTGCAGTGATAAAATAGTGGCATG
AATGTTCTGGAGGTACCCAATTACTTTATGATTGTGTGTAAGGCATTCTC
TGTAGAAAGAAACACATTCCTGGTATTTTATATCAAGGAAAGTATCCAAA
GCTTAGTAGCTAACATTCTAGAAGAATTAACTTCCTACTATTATTCTGCT
AAATAGCGTAATATCATGTTGCCTCCAAGGCTCTTTACACAATTAATGTG
TATGCTACAACTCTCATACCTCATAAGAGAAGTTTCCTTGGCAATACATG
TATATTATTATTCCCCCCCCCCCCTGGTCAAAGAATATATAATATGTGTA
TTACAGTCACCAGACAACAAAGAAAAATATACAGGGGCGGTGTGAGATTT
TATATTATGGCTCAGGGACCATTTCCTAAGACAAGGCCAAAAACTCTTTA
TAGCCTCGACTCATGCTTATTTAATTGCAGGGTAAATTTGCCTTCCGGAT
ATAGCATAACCCCTGCACTTTTTACATCATCCAAATCATGCTTACTTCAC
ATTTCCTTGATTCTGTCCATCTTGATTGTCCGTAACAGTCTTCATATTAC
CCTTTAGTACTCTTCTATATTTCGCCCCTATTCGCCCACTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o07.b1 MSMg01no069_o07.b1 CHROMAT_FILE:
MSMg01no069_o07.b1 PHD_FILE: MSMg01no069_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:46 2005
         (318 letters)



>mm_chr4_36901534_36902251
          Length = 718

 Score =  501 bits (259), Expect = e-146
 Identities = 295/309 (95%), Gaps = 6/309 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattccatggag-acaaacctggtgataatggagtgacaagtaactgttttgccatgtg 71
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattccatggagaacaaacctggagataatggagtgacaagtaactgttttgccatgtg 272

                                                                       
Query: 72  atttgtgtacatcaatttagtgatgctctgtgttctcagatgacaggaaaactgatgctt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atttgtgtacatcaatttagtgatgctctgtgttctcagatgacaggaaaactgatgctt 332

                                                                       
Query: 132 atgcaaatttgtcagaggtaatgaagctattttgtcataaataagtacgcatggaaccta 191
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 atgcaaatttgtcagaggtaatgaaactattttgtcataaataagtacgcatggaaccta 392

                                                                       
Query: 192 tgcccactctattatgaagtctttccttttaaatgtcttgttcatttctgtcattcagga 251
           |||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct: 393 tgcccactctattatgaagtctttacttttaactgtcttgctcatttctatcattcagga 452

                                                                       
Query: 252 acaaacatttgtggttattcagacttattt--ggggaccattgtattatatttaaattta 309
           ||||||||||||||||||||||| |||     |||||||||| |||||||||||||||||
Sbjct: 453 acaaacatttgtggttattcagagtta---aaggggaccattttattatatttaaattta 509

                    
Query: 310 gactatggt 318
           |||||||||
Sbjct: 510 gactatggt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)