BAC Information

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BAC

Clone NameMSMg01-070J23
Chromosome4 (Build37)
Map Location 58,627,537 - 58,627,894
singlet/doubletsinglet
Overlap genenone
Upstream genePalm2, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306
Downstream geneLOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070J23.T7 (MSMg01no070_j23.b1)MSMg01-070J23.TJ (MSMg01no070_j23.g1)
ACCAG294599AG294600
length681697
length of high quality
(start - end)
390 (22 - 411)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no070_j23.b1 PHD_FILE: MSMg01no070_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005CHROMAT_FILE: MSMg01no070_j23.g1 PHD_FILE: MSMg01no070_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAGAATGCGCGGAATTCTCTATGTGTCACCCTATCGCA
CTGTCTGTATTTCCCGGTGGTCAGATTCCAGGCTGCAAATGAGAGCCCCT
CCGCCCCCCCCGCCCCCCCCACCCCCGTTCACATCATCACAGCAGGTGTT
CCCAAAGGCAGTGAGCTGACTTTAGGAGGGGACTTGCAATGAGTGTAGAA
CCACAACATGACATCCGCAAAGTCTGGTAAAGCAGGCTATAATTAATTGT
GTGGGCACTTAAGGAAATGAAATCCCAGCAGGCTCCTGGTTCCCCTCTTA
TTTAGCTTCGACCATTCCCTCAGGAATGTGTTCCTTCCCTATAAACTTCC
TTTTGTCTGGACTCACAGGCGTTTAATAGATACCTGAACAGCTCCCCGCA
AGCTTTTGCCACCCACAGAGACTGGTCCCTTGTTGTCTCCTGCTAATGCC
AACTCTAGCGGACGTCGCACACTTTGTGGATTTGACAGAATCACGGCACA
GAGAACTGCTATCATTGTGCCTTTGCTCTACCAAGTCTAGTATGTTCCAG
CGCTTGCTTATTTTACATCTTTGACTTCTTCTCCCAAGCTCTCAAGGCAT
TCTGAATAGAATGCCTAACTTTTGCCCTAATCAGCTAACACCTTACATAA
TAATCCTGGCTTTTGACAGCCCACTATTTTT
ACATGAAGTGGTAGCCTGGNGGCGCCTGGTTTCGTATCTAGGTGAACTAT
AGAAGGATACCAAAATACTCCAGACTGGGGCAGTGAGTTTGAGAAAAGAA
GAAAAGATGTTGTCTTACTCAGGGTTTCTATTCCTGGACAAAACATCATG
ACCAAGAAGCAAGTTGGGGAGGAAAGGGTTACACTTCCACACTGCTGTTC
ATCACTGAAAGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGTAG
CTGATGCAGAGGCCATGAAGGGATGTTCTTTACTGGCTTGCCTCACCTGG
CTTGCTCAGCCTGTTCATGNATATAACCCAAGACTACCAGCCCAGAGATG
GTCCCATTTATAAGGCCACCTCCTTCCTTGATCACTAATTGAAAAAATGC
CTTACAGCTGGACCCCATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTC
TGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGA
TGTATACACAGATTTTTGGTGAAACAAGAACAGAACACAGACGTAAGAGC
AGAATTGCATGACCGAGACTCCCTCCATCTTGGGTTCAGCTTAGGAATAT
CTTTTAAAACCTGCCAGGATGCTTGTCTAATGGACCTTTTGACTTTGCTG
ACTTCCTGTTTTTTCCGTATTACCGAAAAAGCACTTCTCACTGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_j23.b1 MSMg01no070_j23.b1 CHROMAT_FILE:
MSMg01no070_j23.b1 PHD_FILE: MSMg01no070_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:45 2005
         (390 letters)



>mm_chr4_58627322_58628112
          Length = 791

 Score =  555 bits (287), Expect = e-162
 Identities = 345/373 (92%), Gaps = 17/373 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctctatgtgtcaccctatcgcactgtctgtatttcccggtggtcagattccagg 61
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattctctatgtgtcagcctatcacactgtctgtatttcccggtggtcagattccagg 275

                                                                       
Query: 62  ctgcaaatgagagcccctccgccccccccgccccccccacccccgttcacatcatcacag 121
           |||||| |||||||||              | ||||||||||| |||||||||||| |||
Sbjct: 276 ctgcaagtgagagccc--------------caccccccaccccagttcacatcatcccag 321

                                                                       
Query: 122 caggtgttcccaaaggcagtgagctgactttaggaggggacttgcaatgagtgtagaacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caggtgttcccaaaggcagtgagctgactttaggaggggacttgcaatgagtgtagaacc 381

                                                                       
Query: 182 acaacatgacatccgcaaagtctggtaaagcaggctataattaattgtgtgggcacttaa 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 acaacatgacatccgcaaagtctggtaaagcaggctataattaattgtgtgggctcttaa 441

                                                                       
Query: 242 ggaaatgaaatcccagcaggctcctggttcccctcttatttagcttcgaccattccctca 301
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 442 ggaaatgaaatcccagcaggctcctggttcccctcttaattagcttcgtccattccctca 501

                                                                       
Query: 302 ggaatgtgttccttccctataaacttccttttgtctggactcacaggcgtttaa-tagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||
Sbjct: 502 ggaatgtgttccttccctataaacttccttttgtctggactcacaggtgtt-aagtaaat 560

                        
Query: 361 acctg-aacagct 372
           ||||| |||||||
Sbjct: 561 acctgcaacagct 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space:   297942
Effective search space used:   297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)