Query= MSMg01no071_m17.b1 MSMg01no071_m17.b1 CHROMAT_FILE:
MSMg01no071_m17.b1 PHD_FILE: MSMg01no071_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:19 2005
(237 letters)
>mm_chr4_103727176_103727812
Length = 637
Score = 400 bits (207), Expect = e-116
Identities = 226/237 (95%), Gaps = 9/237 (3%)
Strand = Plus / Minus
Query: 1 acaaacaaacacaaaaaacaaacaaaaaaaaacccaaaaccaaaacaaacaaacaaacaa 60
|||||||||||| |||||||||||||||||| |||||||||| ||||||||||
Sbjct: 498 acaaacaaacac-aaaaacaaacaaaaaaaaccccaaaacca--------aaacaaacaa 448
Query: 61 acaaaaaaacccaaaaaccagcagaaactatgttatggtcaggagaagcaggatcaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acaaaaaaacccaaaaaccagcagaaactatgttatggtcaggagaagcaggatcaagct 388
Query: 121 ccagctttgacctaaatacacttccatcctaggaaagaaagccttgtcatagtcttgata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 387 ccagctttgacctaaatacacttccatcctaggaaagaaagccttgtcatagtcatgata 328
Query: 181 atcctctcattgatctgttgcaggattgttaagatggctgagataatagatttcaaa 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcctctcattgatctgttgcaggattgttaagatggctgagataatagatttcaaa 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no071_m17.g1 MSMg01no071_m17.g1 CHROMAT_FILE:
MSMg01no071_m17.g1 PHD_FILE: MSMg01no071_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:19 2005
(356 letters)
>mm_chr4_103614890_103615645
Length = 756
Score = 681 bits (352), Expect = 0.0
Identities = 355/356 (99%)
Strand = Plus / Plus
Query: 1 agtgtgacttgagcttgaagcttaaagctttttattcttcataacccatcctgagagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgacttgagcttgaagcttaaagctttttattcttcataacccatcctgagagtgt 260
Query: 61 gtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatccaggcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatccaggcaga 320
Query: 121 aatctcttcttccatacaattgagacttcagcatgcacttgagactattggatgccacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctcttcttccatacaattgagacttcagcatgcacttgagactattggatgccacag 380
Query: 181 agtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgacttccttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgacttccttat 440
Query: 241 ctatagcaacctgttgaattgcaaagtcctcagttccccagacccttcacagaagagtca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaagcaacctgttgaattgcaaagtcctcagttccccagacccttcacagaagagtca 500
Query: 301 tttggtgcagcattttttagcccatcttttatgtgcaggaagtttttatttaaaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggtgcagcattttttagcccatcttttatgtgcaggaagtttttatttaaaat 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
