Query= MSMg01no071_n07.b1 MSMg01no071_n07.b1 CHROMAT_FILE:
MSMg01no071_n07.b1 PHD_FILE: MSMg01no071_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:21 2005
(195 letters)
>mm_chr4_44777028_44777623
Length = 596
Score = 344 bits (178), Expect = 2e-99
Identities = 184/186 (98%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattaagctaac-catcaacataaaagaataaagattgcttagaaatagtgttc 62
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattcattaagctaacacatcaacataaaagaataaagattgcttagaagtagtgttc 263
Query: 63 agtcacaattaggataatatgaatgtagtaaactcattttaaagcattctgttgttttgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtcacaattaggataatatgaatgtagtaaactcattttaaagcattctgttgttttgg 323
Query: 123 taatatttgggtctaaagatcccctcaactagtttctattcatgttcctgtgtgtgtgtg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatatttgggtctaaagatcccctcaactagtttctattcatgttcctgtgtgtgtgtg 383
Query: 183 tgtgtg 188
||||||
Sbjct: 384 tgtgtg 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space: 109956
Effective search space used: 109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no071_n07.g1 MSMg01no071_n07.g1 CHROMAT_FILE:
MSMg01no071_n07.g1 PHD_FILE: MSMg01no071_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:22 2005
(533 letters)
>mm_chr4_44919239_44920168
Length = 930
Score = 992 bits (513), Expect = 0.0
Identities = 524/529 (99%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 5 gtttttgaacaatcatctgattgccctgtacaggaagatgatgactgatatgggagtgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtttttgaacaatcatctgattgccctgtacaggaagatgatgactgatatgggagtgga 671
Query: 65 tgatatgaaacttcttctcttttattagataacagtactacaattaaaaaagacttcaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgatatgaaacttcttctcttttattagataacagtactacaattaaaaaagacttcaaa 611
Query: 125 gcagaggtcattggagagcatacatgttaattctaaatacaaaatgtaaccgcaatcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gcagaggtcattggagagcatacatgttaattctaaatacaaaatgtaaccgcaatcatt 551
Query: 185 aatcaaaatttaaaatcctatttttcctacatgctaaactttggtgacttcttcttttta 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 550 aatcaaaatttaaaatcctatttttcctacatgctaaactttggtga---cttcttttta 494
Query: 245 acactcctgagtattgtacacagagatattttaaaaattctcagcaagcagaatggctaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acactcctgagtattgtacacagagatattttaaaaattctcagcaagcagaatggctaa 434
Query: 305 gcatggaaaatttagatagaataaacttctaaagaaagaagctaactactgcaagtgaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcatggaaaatttagatagaataaacttctaaagaaagaagctaactactgcaagtgaaa 374
Query: 365 acttggtctgattaaaacatttagactgaatgggtagtcagctgaagtgaaaacacacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acttggtctgattaaaacatttagactgaatgggtagtcagctgaagtgaaaacacacac 314
Query: 425 agcaccatcatgtagtcctggcccacggctcccaccttcctggcatttaggtagatgaac 484
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agcatcatcatgcagtcctggcccacggctcccaccttcctggcatttaggtagatgaac 254
Query: 485 accagaacacacacagcgcactcgtacatctgtttcggcaatgtggttc 533
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 accagaacacacacagcgcactcgtacatctgtttcggcaatgtggttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 930
Length adjustment: 10
Effective length of query: 523
Effective length of database: 920
Effective search space: 481160
Effective search space used: 481160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
