Query= MSMg01no071_p14.b1 MSMg01no071_p14.b1 CHROMAT_FILE:
MSMg01no071_p14.b1 PHD_FILE: MSMg01no071_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:33 2005
(627 letters)
>mm_chr4_64442683_64443708
Length = 1026
Score = 1151 bits (595), Expect = 0.0
Identities = 619/627 (98%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 1 ccatggaatgttcagagtagtttaaatgttgcctttttgagtaaggacatctgtcagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ccatggaatgttcagagtagtttaaatgttgcctttttgagtaaggacatctgtcagcta 767
Query: 61 ttggctaacttttaggatggaacatttctcaggagtcttctcaaaattcacgacatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttggctaacttttaggatggaacatttctcaggagtcttctcaaaattcacgacatggat 707
Query: 121 acaataagttgtgttataaataccagaataaacaagctgctctttttctgaatccctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acaataagttgtgttataaataccagaataaacaagctgctctttttctgaatccctttt 647
Query: 181 tagtgctttcataaatcaccacatactcttattgttttcaaacttagcaagtgtaactcc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tagtgctttcataaatcactgcatactcttattgttttcaaacttagcaagtgtaactct 587
Query: 241 ccttggctctggataataatgatgcaatgatggtgactaattctataactgtaacgtaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ccttggctctggataataatgatgcaatgatggtgactaattctataactgtaacgtaaa 527
Query: 301 tacacacaagttcatattcccccaaatatctcagaatcttggcttattatcatttacaga 360
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 526 tacatacaagttcatattcccccaa-tatctcagaatcttggcttattatcatttacaga 468
Query: 361 tatttagcataccatgtacttaaagaactatacagggaaagctcaaatgttaacaacctt 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 467 tatttagcataccatgtacttaaagaactacacagggaaagctcaaatgttaacaacctt 408
Query: 421 tctagaatagagccagaaacaattctaccggtcccaagtggaaattgaagccaaaagttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctagaatagagccagaaacaattctaccggtcccaagtggaaattgaagccaaaagttg 348
Query: 481 aggataaatcaatagcttcctttggaacatcagtctaatattccagtttcatgaacatta 540
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 347 aggataaatcaatagcttcctttggaacatcagtctaatattcaagtttcaagaacatta 288
Query: 541 attttccaggcttctaaaatatcacttcatgttcattgaagcatttaatagaacaggtaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attttccaggcttctaaaatatcacttcatgttcattgaagcatttaatagaacaggtaa 228
Query: 601 gggttggaaagaacagaagaaatgaga 627
|||||||||||||||||||||||||||
Sbjct: 227 gggttggaaagaacagaagaaatgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no071_p14.g1 MSMg01no071_p14.g1 CHROMAT_FILE:
MSMg01no071_p14.g1 PHD_FILE: MSMg01no071_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:33 2005
(542 letters)
>mm_chr4_64283869_64284811
Length = 943
Score = 949 bits (491), Expect = 0.0
Identities = 530/543 (97%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 1 cttcagcctaatccttgtcctgcctgtacttacagaatccactctctttc-atcatagcc 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cttcagcctaatccttgtcctgcctgtacttacagaatccactctctttcaatcatagcc 260
Query: 60 ttatttggctgctgacattctttgaagcttagacttaaacttgtgttgtaagtcagtaaa 119
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttggctgctgaaattctttgaagtttagacttaaacttgtgttgtaagtcagtaaa 320
Query: 120 ttgaatatgaaaggttggcttggcttgtgacagtttgagtcctatggctgctgtagagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatatgaaaggttggcttggcttgtgacagtttgagtcctatggctgctgtagagga 380
Query: 180 ttcctttccagggaacactgaaaatcctattgttcacaagcctttggagattggagattt 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctttccagggcacactgaaaatcctattgttcacaagcctttggagattggagattt 440
Query: 240 aatctgtaaactcattttttcttcttttttttatatatttttattaggtattttcctcat 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctgtaaactcatttcttcttcttttttttatatatttttattaggtattttcctcat 500
Query: 300 ttacatttccaatgctatcccaaaagtcccccatacctggctcacccactcccctaccca 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacatttccaatgttatcccaaaagtcccccatacctggctcacccactcccctaccca 560
Query: 360 cccactcccactttttgaccctggcgtacccctgtactggggcatagaaagtttgcaagt 419
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cccactcccactttttggccctggcgtacccctgtactggggcatagtaagtttgcaagt 620
Query: 420 ccaatgggcctctctttccagagatggcctagtcggccatattttgatacatatgcaggt 479
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 621 ccaatgggcctctctttccagagatggcctagtcggccatcttttgatacatatgcagct 680
Query: 480 agagtcaagagctccggggtacagcttagttcataatgttgttcaacctatagggttgca 539
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 681 agagtcaagagctccggggtactgcttagttcataatgttgttcaaactatagggttgca 740
Query: 540 gat 542
|||
Sbjct: 741 gat 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
