BAC Information

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BAC

Clone NameMSMg01-072A19
Chromosome4 (Build37)
Map Location 87,791,067 - 87,958,050
singlet/doubletdoublet
Overlap geneBC057079
Upstream geneSlc24a2, Mllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072A19.T7 (MSMg01no072_a19.b1)MSMg01-072A19.TJ (MSMg01no072_a19.g1)
ACCAG295687AG295688
length694694
length of high quality
(start - end)		613 (38 - 650)558 (68 - 625)
definitionCHROMAT_FILE: MSMg01no072_a19.b1 PHD_FILE: MSMg01no072_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:39 2005CHROMAT_FILE: MSMg01no072_a19.g1 PHD_FILE: MSMg01no072_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,957,558 - 87,958,050)(87,791,067 - 87,791,624)
sequence
TATTTGCGGCCGTAAACGACTCCTATAGTCCANAAATCCGCGGAATTCCA
GGGTTCTATCTCCAGACTCTTCCACTTAGCTGTTTTATGATCTTGAACAA
ATTAACAGGACCTACCTCAGACCGTGCATGTGGAGATTAAATGAATGAAT
ATGCTGTGCTCCTCTGCTTATTATTCTGAGGTCTTGTCCTAATAAAACAT
AACAAACTGAAAATGTCCTAACTTGAAAATACATGTAATTAACCTAGCTT
GCCAGGCATCCTAGCTCAGCTACACAGTAGTGCACTGCAAAACGCAGCAG
CTCTTCCCAGTGGTTGGGTGGCTTGCTGAGCTGCAGTTTACTGCCCTTGT
GCAGGATCAAGAAGGAACATTGTTCTGTATGTTGCTAGCCCAAGAGAAAT
GTAAATTCAAAGTATTGTTTCTACTAAAGCCATATACCTTTTGGACCATC
AAAAAGACAGCATACAGATGATGTCTGGGGTGTATGTTGTATGTACAGTA
GTCATCATACAGTATACAAGTTGCTTATAAGTTGCTATTATTGCAACTGT
TCTTAGTCAACTTTTCAAAACCGTCGTTATTTCTGGTTAAACAGTTTAAG
AAATAATGGCTCAGGGATTAAATCACCAATGAAAGAGTATTCATGGGCTG
TATCATGGTTCCTGCTACGTGTGTGGGTAGGTGCTTGGTTCTAC

TAGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTACCCACTGTGGGTCTGGGCTTCTGCTCTAG
TTTCAGTGTAAATGTGCTAAATCCTGTAGTGGAAAACTAAATTTACCTTC
AGAGCTCCCCTGAACACCAAGTAGTGTCTTTGCTACATCTGTCCTAAGTG
AGGGATGGAATTGTCATCTCTGTTCTTTTGTTTGGTGTGTGATGTCACGG
TGAGCAGAGCAGACATAATTGTTGCGCTTGTATGTATTTAGACCAGGAGT
AAAGATTGTCATCACATAGTTTCTCATATGAACCCACAGTAATATAAGCT
ACATGTGTTGATCTATGGTCAGGCAGACGGTACTGTGCTGCTAGGCAATA
ATATGAGGGCTTGACTTGACGTGGTCATGATGGTCAGAGGAGGCTTTCCC
AAGGGAGCAACACTGACATGAGACTAAGGACTAATACATGTTATGTAGGC
AAATGGGAGAGGGTGGAACTTACCGTTTACAGGAGATAGAGTATGACAGA
TTCCTCTTACGGGAGCAGGAAAGAATGCTCAAAGCAAAGGGAGAACCATT
TGAGATGAGGCTGGGGGAGGAGATGGGGCCTGACAGTCCAGGTAATGGTA
GGTGATTCAGAAAATTTGGGTCTTTATCTTTGGTGCGGTGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_a19.b1 MSMg01no072_a19.b1 CHROMAT_FILE:
MSMg01no072_a19.b1 PHD_FILE: MSMg01no072_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:39 2005
         (613 letters)



>mm_chr4_87957558_87958570
          Length = 1013

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccagggttctatctccagactcttccacttagctgttttatgatcttgaacaaat 65
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaattccagggttcaatttccagactcttccacttagctgttttatgatcttgaacaaat 434

                                                                       
Query: 66  taacaggacctacctcagaccgtgcatgtggagattaaatgaatgaatatgctgtgctcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taacaggacctacctcagaccgtgcatgtggagattaaatgaatgaatatgctgtgctcc 374

                                                                       
Query: 126 tctgcttattattctgaggtcttgtcctaataaaacataacaaactgaaaatgtcctaac 185
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 373 tctgcttattattctgaggtcatgtcctaataaaacattacaaactgaaaatgtcctaac 314

                                                                       
Query: 186 ttgaaaatacatgtaattaacctagcttgccaggcatcctagctcagctacacagtagtg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgaaaatacatgtaattaacctagcttgccaggcatcctagctcagctacacagtagtg 254

                                                                       
Query: 246 cactgcaaaacgcagcagctcttcccagtggttgggtggcttgctgagctgcagtttact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cactgcaaaacgcagcagctcttcccagtggttgggtggcttgctgagctgcagtttact 194

                                                                       
Query: 306 gcccttgtgcaggatcaagaaggaacattgttctgtatgttgctagcccaagagaaatgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gcccttgtgcaggatcaagaaggaacattgttctgtatgttgctagcccaagagaaatgt 134

                                                                       
Query: 366 aaattcaaagtattgtttctactaaagccatataccttttggaccatcaaaaagacagca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaattcaaagtattgtttctactaaagccatataccttttggaccatcaaaaagacagca 74

                                                                       
Query: 426 tacagatgatgtctggggtgtatgttgtatgtacagtagtcatcatacagtatacaagtt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tacagatgatgtctggggtgtatgttgtatgtacagtagtcatcatacagtatacaagtt 14

                        
Query: 486 gcttataagttgc 498
           |||||||||||||
Sbjct: 13  gcttataagttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_a19.g1 MSMg01no072_a19.g1 CHROMAT_FILE:
MSMg01no072_a19.g1 PHD_FILE: MSMg01no072_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:39 2005
         (558 letters)



>mm_chr4_87790867_87791824
          Length = 958

 Score = 1025 bits (530), Expect = 0.0
 Identities = 551/558 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacccactgtgggtctgggcttctgctctagtttcagtgtaaatgtgctaaatcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacccactgtgggtctgggcttctgctctagtttcagtgtaaatgtgctaaatcctgt 260

                                                                       
Query: 61  agtggaaaactaaatttaccttcagagctcccctgaacaccaagtagtgtctttgctaca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaaaactaaatttaccttcagagctcccctgaacaccaagtagtgtctttgctaca 320

                                                                       
Query: 121 tctgtcctaagtgagggatggaattgtcatctctgttcttttgtttggtgtgtgatgtca 180
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||  ||||||
Sbjct: 321 tctgtcctaagtgagggatggaattgttatctctgttgttttgtttggtgtgcaatgtca 380

                                                                       
Query: 181 cggtgagcagagcagacataattgttgcgcttgtatgtatttagaccaggagtaaagatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cggtgagcagagcagacataattgttgcgcttgtatgtatttagaccaggaggaaagatt 440

                                                                       
Query: 241 gtcatcacatagtttctcatatgaacccacagtaatataagctacatgtgttgatctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcatcacatagtttctcatatgaacccacagtaatataagctacatgtgttgatctatg 500

                                                                       
Query: 301 gtcaggcagacggtactgtgctgctaggcaataatatgagggcttgacttgacgtggtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaggcagacggtactgtgctgctaggcaataatatgagggcttgacttgacgtggtca 560

                                                                       
Query: 361 tgatggtcagaggaggctttcccaagggagcaacactgacatgagactaaggactaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatggtcagaggaggctttcccaagggagcaacactgacatgagactaaggactaatac 620

                                                                       
Query: 421 atgttatgtaggcaaatgggagagggtggaacttaccgtttacaggagatagagtatgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttatgtaggcaaatgggagagggtggaacttaccgtttacaggagatagagtatgac 680

                                                                       
Query: 481 agattcctcttacgggagcaggaaagaatgctcaaagcaaagggagaaccatttgagatg 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agattcctcttaagggagcaggaaagaatgctcaaagcaaagggagaaccatttgagatg 740

                             
Query: 541 aggctgggggaggagatg 558
           ||||||||||||||||||
Sbjct: 741 aggctgggggaggagatg 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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