BAC Information

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BAC

Clone NameMSMg01-072B11
Chromosome4 (Build37)
Map Location 59,873,000 - 59,873,428
singlet/doubletsinglet
Overlap geneSnx30
Upstream geneAI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072B11.T7 (MSMg01no072_b11.b1)MSMg01-072B11.TJ (MSMg01no072_b11.g1)
ACCAG295719AG295720
length688701
length of high quality
(start - end)
434 (36 - 469)274 (76 - 349)
definitionCHROMAT_FILE: MSMg01no072_b11.b1 PHD_FILE: MSMg01no072_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:42 2005CHROMAT_FILE: MSMg01no072_b11.g1 PHD_FILE: MSMg01no072_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAATCCGCGGAATTCTTAG
CATTTGTCACCTCTCCCTCCGGGTGAGGTTACTTTTCACCCTGCAGTCAG
TAAAACACAAAACCTGCTTTTCTTGATTTGGGTACATAAGCAAGCGGCCT
GGTGGCAGGGTGACTGCCTTGCTGGCAAGCAGCCCTTTTGCACCCTGACA
GTTTTCTACACTGCTTGATTCCTGTACCCTGCAGTCCTATTCCTGGCCAC
ACACAGTAAAGAGATCCTGCAGGGCTTACCCGACTCACTGGCTAATGCAC
CTGCTATCGCTCCCCCATCTCTCCTCTCCTTGCTCCATCCTAGCCTACCC
CTCCCCTCTGCATTCTTATCTCTGTCCTTTCTCCTGGGGCTATTTGATTC
CTTGTAACTGACAAACTGCCATTTCCAAATTATATCCTGGTTTTCCACTG
GGGTGAGCAGTCACTGCTGAGACCTTACGTTTTATTATCATGATAGGTAG
TGACATCTGGGAATGATAAAGAGGAGGATGAGTTCACAAGATCCTGCACT
GGGACTTGCCTTCTTGCTGAGGACCTCACACAGCTGCTGCATGGTAGGCG
TCGCTACAGGTTTAAGGCTCTGATTCCATATCCTCTAAATGATGAATGTG
CTGGCGATTGACAAATGACCTCTCCTCCTCTTAAATTG
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATTTT
TAATAGGGTTATTTGGTTCTCTGGCATCTAACTTCTTAAGTTCTGTGTAT
ATATTGAATATTAGCCCTCTATCAGATGTAGGATTGGTAAAGATCTTTTC
CCAATCTATTGGTTGCTGTTTTGTCCGATTGACAGTGTCATTTGCCTTAC
AAAAGCTTTGCAAGTGTATGAGGTCTAATTGTCAATTTTTGATCTTAAAG
CATAAGCTATGTGTGTTGTGTTCATGAAATTTTCCCAAGTGACCATGTGC
TTGATGCTCTTCTCCACTTCTTTTCTATTAGTTTCAGTGTATCTAGTTTT
TGTGGAAGTCCTGTACCAACTTGGACTTGATCTTTGTAGAAGTAGATAAG
AATGGATTGATTTGCATTCTTCTTCATGCTAACTGCCAGTGATCCAGCCC
GGTTTGTTGAACATGCTGTCTTTTCCTCTAGATGGTTTAGCTCCTTTGTC
TACATCCTGCGACCATACATGTGTGTGATCACCCCCCGGGACTTCAATTC
TATTCCATTCATCTACCTGTCTGTCCCTTGTACCATACCAATGCAGTTCT
TTATCAATATTGTTCTGTAACAAACCTTGATGTCTGACATGCTCATTTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_b11.b1 MSMg01no072_b11.b1 CHROMAT_FILE:
MSMg01no072_b11.b1 PHD_FILE: MSMg01no072_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:42 2005
         (434 letters)



>mm_chr4_59872796_59873628
          Length = 833

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/430 (98%), Gaps = 1/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttagcatttgtcacctctccctccgggtgaggttacttttcaccctgcagtca 64
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttagcatttgttacctctccctcggggtgaggttacttttcaccctgcagtca 264

                                                                       
Query: 65  gtaaaacacaaaacctgcttttcttgatttgggtacataagcaagcggcctggtggcagg 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 gtaaaacacaaaacctgcttttcttgatt-gggtacataagcaagcggcctggtggcagg 323

                                                                       
Query: 125 gtgactgccttgctggcaagcagcccttttgcaccctgacagttttctacactgcttgat 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 gtgactgccttgctggcaagcagcccttatgcaccctgacagttttctacactgcttgat 383

                                                                       
Query: 185 tcctgtaccctgcagtcctattcctggccacacacagtaaagagatcctgcagggcttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctgtaccctgcagtcctattcctggccacacacagtaaagagatcctgcagggcttac 443

                                                                       
Query: 245 ccgactcactggctaatgcacctgctatcgctcccccatctctcctctccttgctccatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccgactcactggctaatgcacctgctatcgctcccccatctctcctctccttgctccatc 503

                                                                       
Query: 305 ctagcctacccctcccctctgcattcttatctctgtcctttctcctggggctatttgatt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 ctagcctacccctcccctctgcattcttatctctgtcctttctcctggggttatttgatt 563

                                                                       
Query: 365 ccttgtaactgacaaactgccatttccaaattatatcctggttttccactggggtgagca 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttgtaactgagaaactgccatttccaaattatatcctggttttccactggggtgagca 623

                     
Query: 425 gtcactgctg 434
           ||||||||||
Sbjct: 624 gtcactgctg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space:   350200
Effective search space used:   350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)