Query= MSMg01no072_c04.b1 MSMg01no072_c04.b1 CHROMAT_FILE:
MSMg01no072_c04.b1 PHD_FILE: MSMg01no072_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:46 2005
(604 letters)
>mm_chr4_97403214_97404217
Length = 1004
Score = 1108 bits (573), Expect = 0.0
Identities = 592/599 (98%), Gaps = 2/599 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttgctagacttgacttcgaatgcactacccaaaagtacttggcctacccttg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagttgctagaattgacttcgaatgcactacccaaaagtacttggcctacccttg 262
Query: 65 ccttggatcctctgtggtgccacatataggcagtatacttgtgttagcattgccacttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccttggatcctctgtggtgccacatataggcagtatacttgtgttagcattgccacttct 322
Query: 125 gatgaatcttttttaaaaatccttaacagtaaaactcattatcttataatcaacaacatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatgaatcttttttaaaaatccttaacagtaaaactcattatcttataatcaacaacatt 382
Query: 185 gattaagcagtaagtagtctgtaaaaggtaaagcatcatgcgtatgtgctaagatttcag 244
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 gattaagcaataagtagtctgtaaaaggtaaagcatcatgcatatgtgctaagatttcag 442
Query: 245 aatggaagcaaacaatccaaacatggtggaatgaaaactatgtgtggaaggtgttgtgag 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatcgaagcaaacaatccaaacatggtggaatgaaaactatgtgtggaaggtgttgtgag 502
Query: 305 aggctatgaagaagtcatacacaaactcacacacacacacacacacacacacacacacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggctatgaagaagtcatacacaaactcacacacacacacacacacacacacacacacac 562
Query: 365 acacacacacacacacacacacacaca--aaggagacaagaaactaagagtggcttcctg 422
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 acacacacacacacacacacacacacacaaaggagacaagaaactaagagtggcttcctg 622
Query: 423 taagaaagtcgtcaaagtttaacacacaggagtaaaaggaggggtgtcattgtgtactgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taagaaagtcgtcaaagtttaacacacaggagtaaaaggaggggtgtcattgtgtactgt 682
Query: 483 gaccacaaggagctctgacaccacattagtgacttcattttacatgtgaaaatagttaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaccacaaggagctctgacaccacattagtgacttcattttacatgtgaaaatagttaaa 742
Query: 543 tgtttaatcaagagccacatcctcaaagccttctccatgaactaagattctcattatct 601
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgtttaatcaagagccacatcttcaaagccttctccatgaactaagattctcattatct 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_c04.g1 MSMg01no072_c04.g1 CHROMAT_FILE:
MSMg01no072_c04.g1 PHD_FILE: MSMg01no072_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:46 2005
(542 letters)
>mm_chr4_97540618_97541559
Length = 942
Score = 1009 bits (522), Expect = 0.0
Identities = 537/542 (99%)
Strand = Plus / Minus
Query: 1 aatccaagctttaggtatctgtgagtgccaggtgagcaaaagacacttgatgtcagtggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 670 aatccaagctttaggtatctgtgagtgccaggtgagcaaaagacacttgatgtctgtggt 611
Query: 61 cttcaattcatatgtctgggttctgataccttacagattctaattccaaaaagcatattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cttcaattcatatgtctgggttctgataccttacagattctaattccaaaaagcatattc 551
Query: 121 tctaaaatcgagatgttcagtaggcacacacttcttcagttccgtctagagatgtccaaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 550 tctaaaatcgagatgttcagtaggcacacacttcttcagttccatctagagatgtccaaa 491
Query: 181 tgctagagtttacaacctaccctgagactaccactcccctactcctatacatttaaaatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgctagagtttacaacctaccctgagactaccactcccctactcctatacatttaaaatg 431
Query: 241 agtcattcttttaaggcatcaataaaatggggtgagatgtgtatgtgtgtctataagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtcattcttttaaggcatcaataaaatggggtgagatgtgtatgtgtgtctataagcaa 371
Query: 301 aggactgagaaagtaaagacaaggtacttcacatcccaattcacagcagcctggtttggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 370 aggactgagaaagtaaagacaaggtacttcacatcccaattcacagcagcccggtttggg 311
Query: 361 aaaagacctggtctccaagcacgggttacacctagcacaatagcagcagtcataaatagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaagacctggtctccaagcacgggttacacctagcacaatagcagcagtcataaatagt 251
Query: 421 agtcatctggggaatacccagtgttctagtgctaagaattcattagctgaggggctgggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtcatctggggaatacccagtgttctagtgctaagaattcattagctgaggggctgggg 191
Query: 481 tgatggttcggcttttacgagaacatattgctcttccagaggctggaattcaattttctg 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgatggttcagcttttacgagaacatattgctcttccagaggctggaattcaattttctg 131
Query: 541 ca 542
||
Sbjct: 130 ca 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
