BAC Information

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BAC

Clone NameMSMg01-073I09
Chromosome4 (Build37)
Map Location 115,917,484 - 115,917,792
singlet/doubletsinglet
Overlap genePik3r3
Upstream geneLOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073I09.T7 (MSMg01no073_i09.b1)MSMg01-073I09.TJ (MSMg01no073_i09.g1)
ACCAG296802AG296803
length722731
length of high quality
(start - end)
313 (45 - 357)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no073_i09.b1 PHD_FILE: MSMg01no073_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:36 2005CHROMAT_FILE: MSMg01no073_i09.g1 PHD_FILE: MSMg01no073_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTGAAGGAAATTACAACAGTTTAGAAAATCATGCCACTTCCAAT
TTATAGTTTCTAATGGTAACTGACATTACTATTTTGTTAGCAATTTATCC
ACATGCCTCTAAGCAGTGACCTTTCCATCCCACAGAGTGGCCAATGGTCA
CTCTAATCTGATCCCAGGAAGATATACTCCAAGATCTCAAATGGATACCT
ATAGCCATAGATAACATCTGAATCTAATAGAAACTATCTTCTCCTGTACT
TATATACCTATGACAAAGTTAAATTTATAAACTAAATGTATGAGATTAAG
AAAATACATTTTATTAATTCATCCCGCCCCCCCCAAAGGATTTATGAATG
TGGTTTCCCTTGCAATATCTTATTAAAAAAAAACCACCCTTCCTCTAGGG
GTGTGCGATGACGGCATAACGTCTAAATGATGTTGTAAAGGGTGGCATAT
GTAGTAAGGCATATCGCTTCAGGCTTATGTTATGATATAATGCTTCTTCG
ACCTTATCTCTCTATACATCTCAATATTAACATTTATTACTGATTATGTC
TACAACGTGACTGCTTTGGCCTCTGCGAGACTTCACTCTAATATTTGTGT
TCCCATGCTTGATGTATTATTATTACTCCGCATTTTTCCTTATTTCTCTC
ATCGTCCAACATCTATCTTACC
ACTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGACCTTCGAAAAAAAGTCAGCTC
TCGTAACCACTGAGCCATCTCTCCAGCCCCATTGTTACCGTTTTTTTTTC
AAGACAGGGTTTCTCCTTGTAGACTAGGCTGATCTTGAACTCAGAGATCA
CCCTGTCTCTGTGCCTCCTATGTACTAGGATTAAAGCAGGCTCCACCATC
GCCCTGCCTTTTTTCTTTTTCAGTGCTGGGTTTTGTATGTTGTGTGTATG
CAGGTGCACATATATATGTATCTGTGTAGGCATGTGTGTGTACTGGTGTC
TGGCAGGCAGAGGACAATGCTGTTAATTGTTCATTATGCACTGCCTCCCT
TGTGTTTTGAAATAGGCTCTCACTGGCCTGTAACTCACCATGTAGTTTAG
ATTGTTCCATGAGCCTCATACTCTAGATAGACTGGTTCATGATCCTCATA
TGCTTGCCTGTTTGACCTTCCCTTATTGTTAGTCTCACGGATCTCACTCC
TTTTTTGTGGATTCTAAGTGATTATATCCTGTTTCTTTTCTCATATGTTG
TCATTTTGTCTTTGTTTGAAGTTACTTGTCTTTTATCCGTGGTATGATTT
CTCAATCTCTTGTACTCTCTCATTGTTTTGTTTAATAATCCCTTTCCTTA
TTCATTGTCCACTTGTTCTTCCTTTGCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_i09.b1 MSMg01no073_i09.b1 CHROMAT_FILE:
MSMg01no073_i09.b1 PHD_FILE: MSMg01no073_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:36 2005
         (313 letters)



>mm_chr4_115917430_115918142
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctgaaggaaattacaacagtttagaaaatcatgccacttccaatttatagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaattctcctgaaggaaattacaacagtttagaaaatcatgccacttccaatttatagtt 304

                                                                       
Query: 65  tctaatggtaactgacattactattttgttagcaatttatccacatgcctctaagcagtg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tctaatggtaactgagattactattttgttagcaatttatccacatgcctctaagcagtg 244

                                                                       
Query: 125 acctttccatcccacagagtggccaatggtcactctaatctgatcccaggaagatatact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acctttccatcccacagagtggccaatggtcactctaatctgatcccaggaagatatact 184

                                                                       
Query: 185 ccaagatctcaaatggatacctatagccatagataacatctgaatctaatagaaactatc 244
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccaagatctcaaatgaatacctaaagccatagataacatctgaatctaatagaaactatc 124

                                                                       
Query: 245 ttctcctgtacttatatacctatgacaaagttaaatttataaactaaatgtatgagatta 304
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 123 ttctcctgtacatatatacctatgacaaagttaaacttataaactaaatgtatgagatta 64

                    
Query: 305 agaaaatac 313
           |||||||||
Sbjct: 63  agaaaatac 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)