BAC Information

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BAC

Clone NameMSMg01-073I12
Chromosome4 (Build37)
Map Location 118,651,993 - 118,652,482
singlet/doubletsinglet
Overlap genenone
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1
Downstream geneLOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073I12.T7 (MSMg01no073_i12.b1)MSMg01-073I12.TJ (MSMg01no073_i12.g1)
ACCAG296807AG296808
length710699
length of high quality
(start - end)
498 (45 - 542)390 (76 - 465)
definitionCHROMAT_FILE: MSMg01no073_i12.b1 PHD_FILE: MSMg01no073_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:37 2005CHROMAT_FILE: MSMg01no073_i12.g1 PHD_FILE: MSMg01no073_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCC
GCGGAATTCTCTAATTACCCTAGGCAGCAAATTAAACCATTTTCTATTTT
TATCAACCCAATCTCCTCTGAGTCTCCAGGATACAATGTGTCACTAGATC
AAAAAGGTAAAAATATCTATAGCAAGTACATTTGCCAACAGCGCAATCTT
CCAGTCATTTTTTTCCCCATCATCCATAAGAGTGACCCTCTCATGCCTCT
CTCAGGAGGGTACTAGCTTTGTCCTTCCTTTGGGTGATGAAGAAAATTGA
GACACAGAGAAAAATTAGTAATTCTCACTGTCTTAATCTCAGTTCCATTG
CTGTGAAGAGACACCATGACTAAGGCAACTCTCATAAAAGAAAGCAATTA
ATTGGAGCCTTGCTTACAGTTTCAGAAGTTAAGTCCATGGACATCACGGC
GCCACACATGGTACTAGAGAGGTAGCTGAAAGCTATATGATGGTCAGTCT
GCTGGCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGACTGTGCCCCGTGCGTGATTGCGCCATCTGTGATAGTATC
TCCCATGAGATATTCCTTTCTACACAGAGTCCACCTCCCTATACTTCTAA
ACCTTTTCTAATAGAGCTGTGTCTCCGTGGACCCTCCCCATAAATACATG
TAGTCTATGN
CTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAAACAGTTACTGAGGGGACTTT
GTCTTTGACACTTAAAGATTGAATGTTAGCTGGACATGGTGGTATGCACC
CCTTTAGTCCAGCACTCAGGAGGCAAAGCCTAGAAGATCTTTGTGAGTTT
GAGGCCAGCCTGGTCTACATAGTGAGTTCCAGGACAGCCAGCGATATATA
TAGAGACCCTATCTGAGAAAAAGAATAAACTAGAAAATAAAAACTGGACC
TTCGATCTGAGCAGTGTGTTTTACTGCTTTCTTTCCTACAGGAACCTAGA
GGCCTACGACATAAAACATTTGCCCAGGGTCATACAGTAAACTGTGGTGG
AGCCAGGTTCCAACCCTAACAACTTCTATGAATATCTTTGACTGCTTTGC
ACTTCCTCTGATGTCACTGGTAGCGAATTGAACAAGGGCTGTGCTTTATA
TAGTGTGAAGGCTGGAGTCAGGAAAGGGCCTGGCAAACTTTTGGGAAATT
TCCAGTATAGAGGAAATAAAGTAGAACTGGCCTGATGGACTGGGAGATGG
GAAGCTGGTTATAATAAGCCTTGAATACCCCTGGGCGGATACTCTTGGAG
TATAAAGCCAGAGAGAGGTGTCTTTGGCTACCCAGGAACCATATGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_i12.b1 MSMg01no073_i12.b1 CHROMAT_FILE:
MSMg01no073_i12.b1 PHD_FILE: MSMg01no073_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:37 2005
         (498 letters)



>mm_chr4_118651784_118652682
          Length = 899

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattctctaattaccctaggcagc-aaattaaaccattttctatttttatcaacccaat 68
           ||||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 210 gaattctctaattaggctaggcagcaaaattaaaccattttctatctttatcaacccaat 269

                                                                       
Query: 69  ctcctctgagtctccaggatacaatgtgtcactagatcaaaaaggtaaaaatatctatag 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcctctgagtctccaggatacaatgtgtcactagatcaaaaaggtaaaaatatctatag 329

                                                                       
Query: 129 caagtacatttgccaacagcgcaatcttccagtcatttttttccccatcatccataagag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caagtacatttgccaacagcgcaatcttccagtcatttttttccccatcatccataagag 389

                                                                       
Query: 189 tgaccctctcatgcctctctcaggagggtactagctttgtccttcctttgggtgatgaag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgaccctctcatgcctctctcaggagggtactagctttgtccttcctttgggtgatgaag 449

                                                                       
Query: 249 aaaattgagacacagagaaaaattagtaattctcactgtcttaatctcagttccattgct 308
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 aaaattgagacacagagaaaaattagtaattctcactgtcttaatcacagttccattgct 509

                                                                       
Query: 309 gtgaagagacaccatgactaaggcaactctcataaaagaaagcaattaattggagccttg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtgaagagacaccatgactaaggcaactctcataaaagaaagcaattaattggagccttg 569

                                                                       
Query: 369 cttacagtttcagaagttaagtccatggacatcacggcgccacacatggtactagagagg 428
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 570 cttacagtttcagaagttaagtccatggacatcacagcgccacacatggtactagagagg 629

                                                                       
Query: 429 tagctgaaagctatatgatggtcagtctgctggctgagagagagagagagagagagagag 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tagctgaaagctatatgatggtcagtctgctggctgagagagagagagagagagagagag 689

                     
Query: 489 agagagagag 498
           ||||||||||
Sbjct: 690 agagagagag 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space:   433832
Effective search space used:   433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)