BAC Information

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BAC

Clone NameMSMg01-073I13
Chromosome4 (Build37)
Map Location 114,070,647 - 114,071,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073I13.T7 (MSMg01no073_i13.b1)MSMg01-073I13.TJ (MSMg01no073_i13.g1)
ACCAG296809AG296810
length738729
length of high quality
(start - end)
277 (41 - 317)545 (72 - 616)
definitionCHROMAT_FILE: MSMg01no073_i13.b1 PHD_FILE: MSMg01no073_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:37 2005CHROMAT_FILE: MSMg01no073_i13.g1 PHD_FILE: MSMg01no073_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTTCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATG
CTTTCTCTGCATCTAACGAGCTGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATACTGGATTACGTTGATGGATATCCGTATATTGAACCATCCCTG
CATCCCTGGGATGAAAGCTACTTGGTCAGGATGGATGATTGTTTTGATGT
GTTCCTGGATTCGATTAGCAAGAACTTTATAGAGGATTTTTGCATCGATA
TTCATAAGGGAAATTGGTCTGATGTTCTCTATCTTTGTTGGGTCTTTTTG
TGGTTTATGNATCATACCCCCTCCGCCCCCATAGAATGAGTTGGGTAGAG
TACCTTCTGTTTCCATTTTGAAAAAAAAAAAGTGAAGAACTGGGATTAGA
TCTTCTTTGAAGGTCTGATAGAACTCTGCACTATCTGGTCCTGGGCTTTT
TTTTGGTTTGTATACTATTTAATGACTGCTTCTAATTTTTTATGTGATAT
AGCACTGCTTAGATTATTATCTCGTTCTCGATTTAACTTTGGTACCTGGC
TATCTGATCTTAAACTTGTTCTTTTTCATCCTTGTTCTACCAGTTCCTGT
GAATATGCGCTCTCTTGTTCTATTCCTCGTCTGTTCTCATCCAATTTTTT
CTACAATTCGGTCGTTACTTAGTCCCTCTTATCTTCGT
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGAAATGTAGCAGAGAGAGGGGCCACA
TGAAGAATGACCGTGAAGTGAGGTATGAAACTTGAATTCTGTGTTCACTT
AGGAGTTATGGAGGATTTAAAGAAGATGGTGGTCTGCTTTGCATCTTAGA
AGTCCATTCAGAACTCAGTGTGAAGGATGCTGAGGTGGCAGGAGAGGGAT
CAAAGAGCCTGGGCAGGATCAGAGCTGGGAGCAGGTGGGGAATGTAGGGT
CTTACCCACATGGCTGCAGTGGGACTGGAAGGGAACAGGTCTGGCCCACT
GTGTTAGAGCCAGTAACCAGCATTTTGTGACAGGTGATAAGCAGAGGCAG
CAAGAGTTAGACTGATGGCTTTAGATGTTTTTATTTTGAGCAGTTTCTTT
ATTAGTTTAGACAGATTGAAGAAGGAACAGAATCTTGTTGAGAAGGTACC
AACAGTCCAGTTTGAGGTCATGTTAATCATGAGCTGCCCACCAAGTGGAG
GTTGTGGGAGGCAGCTTAGAAATATCTTGCTGCTTGGGGGTGTGTACAGG
GCTGTGGACACATTTAGGGCTCATTGCACAAAGGTGAGATATAACCCACT
AGACCCATTAGAGATGGTGGTGATGTCTTATGACAGATTGATTGATAGCC
GGACAGACTGACAGACAGGCTGAAAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_i13.g1 MSMg01no073_i13.g1 CHROMAT_FILE:
MSMg01no073_i13.g1 PHD_FILE: MSMg01no073_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:37 2005
         (545 letters)



>mm_chr4_114070447_114071391
          Length = 945

 Score = 1031 bits (533), Expect = 0.0
 Identities = 542/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaaatgtagcagagagaggggccacatgaagaatgaccgtgaagtgaggtatgaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttagaaatgtagcagagagaggggccacatgaagaatgaccgtgaagtgaggtatgaaac 686

                                                                       
Query: 61  ttgaattctgtgttcacttaggagttatggaggatttaaagaagatggtggtctgctttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 ttgaattctgtgttcacttaggagttatggaggatttaaagaagatggtgttctgctttg 626

                                                                       
Query: 121 catcttagaagtccattcagaactcagtgtgaaggatgctgaggtggcaggagagggatc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catcttagacgtccattcagaactcagtgtgaaggatgctgaggtggcaggagagggatc 566

                                                                       
Query: 181 aaagagcctgggcaggatcagagctgggagcaggtggggaatgtagggtcttacccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagagcctgggcaggatcagagctgggagcaggtggggaatgtagggtcttacccacat 506

                                                                       
Query: 241 ggctgcagtgggactggaagggaacaggtctggcccactgtgttagagccagtaaccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctgcagtgggactggaagggaacaggtctggcccactgtgttagagccagtaaccagc 446

                                                                       
Query: 301 attttgtgacaggtgataagcagaggcagcaagagttagactgatggctttagatgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 attttgtgacaggtgataagcagaggcagcaagagttagactgatggatttagatgtttt 386

                                                                       
Query: 361 tattttgagcagtttctttattagtttagacagattgaagaaggaacagaatcttgttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattttgagcagtttctttattagtttagacagattgaagaaggaacagaatcttgttga 326

                                                                       
Query: 421 gaaggtaccaacagtccagtttgaggtcatgttaatcatgagctgcccaccaagtggagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaggtaccaacagtccagtttgaggtcatgttaatcatgagctgcccaccaagtggagg 266

                                                                       
Query: 481 ttgtgggaggcagcttagaaatatcttgctgcttgggggtgtgtacagggctgtggacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtgggaggcagcttagaaatatcttgctgcttgggggtgtgtacagggctgtggacac 206

                
Query: 541 attta 545
           |||||
Sbjct: 205 attta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)