BAC Information

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BAC

Clone NameMSMg01-074A20
Chromosome4 (Build37)
Map Location 103,615,090 - 103,727,624
singlet/doubletdoublet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
Downstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A20.T7 (MSMg01no074_a20.b1)MSMg01-074A20.TJ (MSMg01no074_a20.g1)
ACCAG297198AG297199
length695699
length of high quality
(start - end)
184 (130 - 313)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no074_a20.b1 PHD_FILE: MSMg01no074_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:18 2005CHROMAT_FILE: MSMg01no074_a20.g1 PHD_FILE: MSMg01no074_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,727,443 - 103,727,624)(103,615,090 - 103,615,373)
sequence
TCAAAATTTGCGGCGCTAAACGACTCCTATTCGTAGCGGAGCCGCGGAAN
TCAGNCATTTCAAAAGAAAGGAACAAACAAACACAAAAAACAAACAAAAA
AAAACCCAAAACTTTAACCCACAACAATCAAACAAAAAAACCCAAAAACC
AGCAGAAACTATGTTATGGTCAGGAGAAGCAGGATCAAGCTCCAGCTTTG
ACCTAAATACACTTCCATCCTAGGAAAGAAAGCCTTGTCATAGTCATGAT
AATCCTCTCATTGATCTGTTGCAGGATTGTTAAGATGACTGAGATAATAG
ATTTCAAAAGCTTCGTCATTTTGGTGAGATGGCTCAGCAGGCAAATGTGC
TTGTTTTGTCTACTCCTCGGGCTCAATCCCCCAAACCAACTGAAAGTTGG
AAAGATACAACTAACTCCACAAGGTTGTCCTCTGATAACAGCATGCATGC
AGAAGCCATGCCCTTCCTACACATATTATGCATACCCACACTCAATTTTT
TAAAGGTTTTTGCAAAGGCAAGTTTTATTTAAATGCAGAGTTATTATTAA
GAAATACTGTGCTCCATTTAATTAGGTGATAATTCCCAAATAAATGCAGA
CACTCTTTTTTGCTGGTTGGTTAGTTTTGGACAAAGGTTCTTACTATGTT
TTTTTGGCTAGCCTAGAAATCACTATGCAGATCAGGTTGGCCTCT
CAATGCATTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGACTTGAGCTTGAAGCTTAA
AGCTTTTTATTCTTCATAACCCCTCCTGAGAGTGTGTCATGGCTGAATTT
GTTGAGTCTGCACAATGCAGAAACTTGTCTTGTTATCCAGGCAGAAATCT
CTTCTTCCATACAATTGAGACTTCAGCATGCACTTGAGACTATTGGATGC
CACAGAGTCTGTAGACAAGATGTCCTACAGGCTCCCTGGGAAGGGCTGGT
GTTTGACTTCCTTATCTAAAGCAACCTGTTGAATTGCAAAGTCCTCAGTT
CCCCAGACCCTTCACAGAACAGCCCTTTGGTGCAGCATTTTTTAGCCCAT
CTTTTATGTGCAGGAAGTTTTTATTTAAAATATAATTCTGTTTTATTTTA
ATGTATTAGTCTAAAGCCCTTTTAAAGGCAACAGGGTCCTTTTAAAAACT
AGTTATACAAGGAACTTCAATATATAAAACAGAATAATGACAGTTGCCTT
TGCTTAAAAAGAAAGACCTGAGCCCCAGGTACTTCTTTCTTCATTTATCC
CTAATTTCATTACTCTACAGATCCCTTGGAGCATATTAAATGACCGCGAA
ACCATTGTTTTAAAACAAACATACTCTTTTGATCACCGATTTTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a20.b1 MSMg01no074_a20.b1 CHROMAT_FILE:
MSMg01no074_a20.b1 PHD_FILE: MSMg01no074_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:18 2005
         (184 letters)



>mm_chr4_103727243_103727826
          Length = 584

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaaaaaaacccaaaaaccagcagaaactatgttatggtcaggagaagcaggatcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaacaaaaaaacccaaaaaccagcagaaactatgttatggtcaggagaagcaggatcaag 323

                                                                       
Query: 61  ctccagctttgacctaaatacacttccatcctaggaaagaaagccttgtcatagtcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctccagctttgacctaaatacacttccatcctaggaaagaaagccttgtcatagtcatga 263

                                                                       
Query: 121 taatcctctcattgatctgttgcaggattgttaagatgactgagataatagatttcaaaa 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 taatcctctcattgatctgttgcaggattgttaagatggctgagataatagatttcaaaa 203

             
Query: 181 gc 182
           ||
Sbjct: 202 gc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_a20.g1 MSMg01no074_a20.g1 CHROMAT_FILE:
MSMg01no074_a20.g1 PHD_FILE: MSMg01no074_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:18 2005
         (284 letters)



>mm_chr4_103614890_103615573
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgacttgagcttgaagcttaaagctttttattcttcataacccctcctgagagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agtgtgacttgagcttgaagcttaaagctttttattcttcataacccatcctgagagtgt 260

                                                                       
Query: 61  gtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatccaggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatggctgaatttgttgagtctgcacaatgcagaaacttgtcttgttatccaggcaga 320

                                                                       
Query: 121 aatctcttcttccatacaattgagacttcagcatgcacttgagactattggatgccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctcttcttccatacaattgagacttcagcatgcacttgagactattggatgccacag 380

                                                                       
Query: 181 agtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgacttccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctgtagacaagatgtcctacaggctccctgggaagggctggtgtttgacttccttat 440

                                                       
Query: 241 ctaaagcaacctgttgaattgcaaagtcctcagttccccagacc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaagcaacctgttgaattgcaaagtcctcagttccccagacc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)