BAC Information

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BAC

Clone NameMSMg01-074E03
Chromosome4 (Build37)
Map Location 24,566,036 - 24,721,453
singlet/doubletdoublet
Overlap geneKlhl32
Upstream geneLOC100040464, LOC623873, LOC664973, F730047E07Rik
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074E03.T7 (MSMg01no074_e03.b1)MSMg01-074E03.TJ (MSMg01no074_e03.g1)
ACCAG297356AG297357
length681700
length of high quality
(start - end)
107 (136 - 242)219 (136 - 354)
definitionCHROMAT_FILE: MSMg01no074_e03.b1 PHD_FILE: MSMg01no074_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:34 2005CHROMAT_FILE: MSMg01no074_e03.g1 PHD_FILE: MSMg01no074_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,566,036 - 24,566,142)(24,721,239 - 24,721,453)
sequence
NCAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTCAGTACTTTACCCACTGAGGCTCGATTGTTTTTTGTTTC
TTGTTTTTTGTTTTTTGTTTTTCCTTTTACAGTAGAATACTTGGCCACTG
TACTTGGCCTTTTTTCTTCTTTAATGCTTTCAGTTTCCTCTTATTTAAAC
GAATTCCAATTTCATACTCATACTTTAATTACTCCTAAAGTGGCAACATT
AAGTATGATCGCCTATTAATCATTTTAATAGAATTAAGCTCCCTATTATC
CTCTGACACAAGTCGTACAATGAGAATAGATACACTGTGTTCACACCTAC
ACTCTTAGTTTGAAACCACCTCTTACTCTGTATCCAAGGCTAGCCTAGAG
CATACTATGTAGCTGTGATAGGACTTGAACTCTTTTAAGACCATCCTGTT
TTGTTCCAGTGTTGCTTACTATAGACATATTACTCACCCTCAAAATACAT
CTTTAATATCTACCCTTAAAAGTGACCCAATTCCCCCTACTTTCTCATGC
CCACTAACCCCACCTTTTCTTCTTTTTCTACGAATTCCTCAAGTAATTTT
TCCACGTTGCTTTATTCCAACTCGCACTTCATTTATTCCCTTCTTTTTTT
ACGTAATTCACGCTCTCTTTTCCATTTTCCT
NNTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGTCTTTTCCTTAATGA
TACTAATTAATCTGCATTCTATGTGCCCCATAGAAAATTGTATAAAGAAC
TATTTATGCTTCCGAAAGTGACTTTCAGTTACTGCTTTTGAAAGCCTGCC
TACCACGGGAGCCACAGATGAATATTCAATGGCTGTGAGCCTTTCAGACT
CTGCTGAAAATAATCCTTCCACCTTCCCACAAGAACTTCCTGTAGCCTCA
CTTTCTCTGGAGTTATTTTCTTTCCATAGTTTGGTCTTTGGTGCTTCCCA
CCAGGAAATGTTTTATTTTGCCCGCCCCCCCGCCCCCGGTTTTTCCTAGT
AACAATTATGCTCTTTGCTATGCACAAAATAGTATATAACCCCATTTCTG
CCCTCCGTTGGCTTACTTAACGTTTACCCCTGTCTAACCATGCATCCCTG
CCGCGTAACACCTTGTTCTCCCCCGATTATCCCTTTCCTCCCATTGTTTT
CCCACTCCTAGTACCTCTCATTCTTTTGTCTCCCCCCGCCCCTGTTTTCT
CCCCCCCTTTCTCTTCTACCACTCCAACACCTTATGCCACTTCATTTGTT
CACTTTTACCCCTCTGCGTCATTCCCCTTTACCCCACCGCGCTCTTTCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_e03.b1 MSMg01no074_e03.b1 CHROMAT_FILE:
MSMg01no074_e03.b1 PHD_FILE: MSMg01no074_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:34 2005
         (107 letters)



>mm_chr4_24565836_24566342
          Length = 507

 Score =  192 bits (99), Expect = 7e-54
 Identities = 105/107 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacttggccactgtacttggccttttttcttctttaatgctttcagtttcctcttatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aatacttggccactgtacttggccttttttcttctttaatgctttcggtttcctcttatt 260

                                                          
Query: 61  taaacgaattccaatttcatactcatactttaattactcctaaagtg 107
           ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 taaacgaattccaatttcatactcatactttaattacccctaaagtg 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no074_e03.g1 MSMg01no074_e03.g1 CHROMAT_FILE:
MSMg01no074_e03.g1 PHD_FILE: MSMg01no074_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:34 2005
         (219 letters)



>mm_chr4_24721039_24721657
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtataaagaactatttatgcttccgaaagtgactttcagttactgcttttgaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 415 aattgtataaagaactatttatgcttccgaaagtgactttcagttactggttttgaaagc 356

                                                                       
Query: 61  ctgcctaccacgggagccacagatgaatattcaatggctgtgagcctttcagactctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgcctaccacgggagccacagatgaatattcaatggctgtgagcctttcagactctgct 296

                                                                       
Query: 121 gaaaataatccttccaccttcccacaagaacttcctgtagcctcactttctctggagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaaaataatccttccaccttcccacaagaacttcctgtagcctcactttctctggagtta 236

                                              
Query: 181 ttttctttccatagtttggtctttggtgcttccca 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttttctttccatagtttggtctttggtgcttccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)