BAC Information

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BAC

Clone NameMSMg01-074M01
Chromosome4 (Build37)
Map Location 44,310,037 - 44,310,351
singlet/doubletsinglet
Overlap genenone
Upstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Downstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M01.T7 (MSMg01no074_m01.b1)MSMg01-074M01.TJ (MSMg01no074_m01.g1)
ACCAG297733AG297734
length696740
length of high quality
(start - end)
318 (44 - 361)169 (128 - 296)
definitionCHROMAT_FILE: MSMg01no074_m01.b1 PHD_FILE: MSMg01no074_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:13 2005CHROMAT_FILE: MSMg01no074_m01.g1 PHD_FILE: MSMg01no074_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTCCGTACTGCCTGAACAGGAAATACGCCCACAGAGGTTCTGGG
GCACAGAGGCTCATGGCTCCCGCCTTCTTGAACTGGGCTGTTTTCTCTGC
TGTAGTATTGTTGTTTCTTTCTTTTTTTTGTTTTCTCTATGTAGCTTTGA
CTGGCCTGGAACTCACAGTGTAGGCTGGCCTTGAACTCACAAAGGTACAT
TTATCTCTGCCTCCCGACTGGTGTGATTAAAGCTGTGTGCCACCACCACC
TGGCCTAATTATTCTTTCTAGTGTGCTGCTATTCAAAATAGCCGCTCAAA
ATCATCTTGGGAATTTTACATAGATATCAAATTTTTTTCGTCATAACCTT
GATACACTTTCTAACTGGTAACTATTTTTGACTGTTGGTTGTTGACTTTG
TTTGATTCGTCTTTTGTGGCACCGATTGTCCTGCAACTTGATCTGCACCC
TCACAGAGACCCGTAAACCCTCTACCAATTTTCATTTCCTCACTTCCCCA
TTCTTTACAAGATGCACCCACCCCCATCTATTTTGCACCTCCGTCACTGC
CCCCCCATACCTCTTAACAGTTTGTTAGGTCCCTTCTCCCCCTTGCTTTT
TGTTCCCTCTTGTTTTCCCGCTCCCCCCTCTCTTTTCCCTTTGCCG
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGATTTCCCTTACTATAAAAA
TTCTCTGAGGTCATCCTTCAGAACCGTTCTTCACCGATGAAATGAGCCAG
CTCAAGCCCAATTAAAGTATAAAGGCGGGTTTATAGGAGGAAGGTCTCGG
GTGAGCTCACAGATCTGACAGGAGGGAGTCAGCGAAGTCACTACACAGAG
GGAGATGGAGGGGAAGGAGAAGAGAGAGTATGGGGAACAGAGGGGAGAAA
CCAAAATGTCCAACCCATGTAGCGTACTGCCTCTAGGTGAGAGGGGGCCC
AGCCCCTGGCGCATTTTTTCTTCACCCCCCCCCCCACGGCGTATCCGCCC
TGTTTCATTATTTCGCTCGGTCCGACTCACGATGAACAAACTGTCTGCGC
CGGCTCCTTACCTTCTCCTTCCTCCCCTTTTCTTTCCATTTATCCTCCCT
CTTTTCCCAACTATCTGCTTATCCCCAACACACCACTATTTCCCCTCCAT
CATATCCCTTCCACCCCTTTACTCCCCCCCCGCCCCCACCCTCCCTACGA
TATCTGTGTCCCGCCCCCTGTCTTTTTCTCCCCCCCTCCTCCCATCATAA
CCTTCCCTTCCCCTATCCCCCCATTCCTTCTTTCTCATTTTACCCCCCCT
CCCTCCTTACCCCTCTTCTCCCCTCCCATTCACCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m01.b1 MSMg01no074_m01.b1 CHROMAT_FILE:
MSMg01no074_m01.b1 PHD_FILE: MSMg01no074_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:13 2005
         (318 letters)



>mm_chr4_44309834_44310552
          Length = 719

 Score =  503 bits (260), Expect = e-147
 Identities = 302/316 (95%), Gaps = 2/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtttccgtactgcctgaac-aggaaatacgcccacagaggttctggggcaca 62
           |||||||||||||| || ||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 204 ggaattcagtttccttattgcctgaacaaggaaataagcccacagaggttttggggcaca 263

                                                                       
Query: 63  gaggctcatggctcccgccttcttgaactgggctgttttctctgctgtagtattgttgtt 122
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 gaggctcatggctcctgccttcttgaactgggctgttttctctgctgtagtattattgtt 323

                                                                       
Query: 123 tctttcttttttttgttttctctatgtagctttgactggcctggaactcacagtgtaggc 182
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tctttc-tttttttgttttctctatgtagctttggctggcctggaactcacagtgtaggc 382

                                                                       
Query: 183 tggccttgaactcacaaaggtacatttatctctgcctcccgactggtgtgattaaagctg 242
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 tggccttgaactcacaaaggtacatttatctctgcctcctgactggtgtgattaaagctg 442

                                                                       
Query: 243 tgtgccaccaccacctggcctaattattctttctagtgtgctgctattcaaaatagccgc 302
           ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||
Sbjct: 443 tgtgccaccaccacctggcctaactattctttcgagtgtggtgctattcaaaatagtcgc 502

                           
Query: 303 tcaaaatcatcttggg 318
           ||||||||||||||||
Sbjct: 503 tcaaaatcatcttggg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)