BAC Information

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BAC

Clone NameMSMg01-074M11
Chromosome4 (Build37)
Map Location 118,315,114 - 118,315,345
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290
Downstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M11.T7 (MSMg01no074_m11.b1)MSMg01-074M11.TJ (MSMg01no074_m11.g1)
ACCAG297753AG297754
length693699
length of high quality
(start - end)
139 (99 - 237)233 (125 - 357)
definitionCHROMAT_FILE: MSMg01no074_m11.b1 PHD_FILE: MSMg01no074_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005CHROMAT_FILE: MSMg01no074_m11.g1 PHD_FILE: MSMg01no074_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGGTTTTACGTCTTCTCAGGGCTCCAGCCCAGCCCAGAAGGCTAAGT
GTCCATGTCTAATTGAACCACTCTCTCTCTCTTTCTCCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTGCATTTCTCCTCTCC
TCTTCTTATGTAGCATAATGAAATCTTTATGAATATAATCAACTAATACA
GGGTGGTTGTATCATCCTACATATGACACTCATTTAGTTCTGTCTGCTTC
TCTCTGAACTTCTGTCTCTTAACTGATCTTGGGCAATAAGAGTCTGCCCG
GACTCCACTGTCTGCTCAGAGCTCATGGGGATCACCAATCCATTGATAAG
AGTTGGTTTCCCACCTGTGAAACAAATCTTATCAACAGCTCTGTTTGGTC
CAGGGTTGCTGCTATGACGCTTCTGATTCACGCTGATTGCCACCACTGAC
CTTATCCCATTGTACCATAATGAACGTCTTCCTTGACACCCTCCCACTTG
ACTCTTCTTGACACCCCCCCCTTCTATTCTTAATTTCATCCCTTAAAATG
TATTTGATTATCAGGCTTTGTTATATTCCCTTCTACCCTTTCTTGTTTTC
CTCCCTTTTTTTCTCCCTTCACCCTTCTCTTTTCCCTTTTCCC
TCACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTCAGAGCGGCTCAGCTGCAG
CATAATTGGTCTGCTTCTAGCACGGAGGACTCCTGCGGCAGCAGAATGGA
GGAGGAGTCGGCCTCCGGAATGGCAGAGTGAATTGGGAGCCTCATAGCAA
GAGGCGAGAGGAGCGGAGAACTTTCAACTAACATTACTTTAGTTTAATTG
GGCTTAGAGGCAGGCAAATTTCTGTGTGGCTGGCAGCTTTTATATCCTCC
AGGGAAGTTCCAGGCTAATGTAGAGCTTCTGGGAGTTCCCAGTGGCCCAC
AGTCTGGTTTTTGTTACCGCGCCCGCCACATGACGCACACAGCTATCCTC
AGGCAGGTATCTCCCCCCACCCACGATAATGATGGAAGCTCAGAAGCTTC
CTCTTCGTCCAGCTGGCTTGACATGCATAGCCGTCACCAGACCTCCGCGC
TTCTAGAGCTCTGCTTCCTCCCCGTCTAGCTGGCCTGTTATGCATAGTCG
TCTTTTTACATCCCGCTTCCCCGAGCTTCGAAGGTTGCCCCGTCCACTTC
TTACCTCCCCCTTCATACATCTGACATCTCTTCACTTCTGACCTCCCTGA
TGCCCTTTACCGCCTTCACTTCGCCACTCTCCCCCCCCCTCCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m11.g1 MSMg01no074_m11.g1 CHROMAT_FILE:
MSMg01no074_m11.g1 PHD_FILE: MSMg01no074_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:15 2005
         (233 letters)



>mm_chr4_118314914_118315545
          Length = 632

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggactcctgcggcagcagaatggaggaggagtcggcctccggaatggcagagtgaatt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gaggactcctgcggcagcagaatggaggaggagt-ggcctccggaatggcagagtgaatt 259

                                                                       
Query: 61  gggagcctcatagcaagaggcgagaggagcggagaactttcaactaacattactttagtt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggagcctcatagcaagaggggagaggagcggagaactttcaactaacattactttagtt 319

                                                                       
Query: 121 taattgggcttagaggcaggcaaatttctgtgtggctggcagcttttatatcctccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taattgggcttagaggcaggcaaatttctgtgtggctggcagcttttatatcctccaggg 379

                                                                
Query: 181 aagttccaggctaatgtagagcttctgggagttcccagtggcccacagtctgg 233
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagttccaggctaatggagagcttctgggagttcccagtggcccacagtctgg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)