Query= MSMg01no075_f23.b1 MSMg01no075_f23.b1 CHROMAT_FILE:
MSMg01no075_f23.b1 PHD_FILE: MSMg01no075_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:01 2005
(585 letters)
>mm_chr4_35158182_35159166
Length = 985
Score = 1011 bits (523), Expect = 0.0
Identities = 568/585 (97%), Gaps = 6/585 (1%)
Strand = Plus / Plus
Query: 1 gagtcagtactgctagagggtgtcagagaaatttggtaaaattacattgcttccttttac 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gagtcagttctgctagagggtgtcagagaaatttggtaaaattacattgcttccttatac 260
Query: 61 tatggggttatttcaattgtagcctactgtttagatgataatgtatgatatgctagtgat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggggttatttcaattgcagcctactgtttagatgataatgtatgatatgctagtgat 320
Query: 121 gataaaagtcagatcatgttcaactgtagaacgaattaccttatttactttctctgcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaaagtcagatcatgttcaactgtagaacgaattaccttatttactttctctgcact 380
Query: 181 gctgccaactacaacagaacagccacaggtctgcaggtgtgagctgatggcactgtaggt 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgccaactacaacggaacagccacaggtctgcaggtgtgagctgatggcactgtaggt 440
Query: 241 aaggaaaacattgacggagttacagcttcacaacgacaaagcccagcaaggttaggacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaaaacattgacggagttacagcttcacaacgacaaagcccagcaaggttaggacaa 500
Query: 301 cacacaagagcttgatgaacaccaaagccatctgcatgatgtcatcttccacccgggtaa 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 cacacaagagcttgatgaacaccaaagccatctgcatgatgtcatcttttattcgggtaa 560
Query: 361 aaccctgcattttttagggacctttcacaggtcttaagacaactcgggacaggagcgatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccctgcattttttagggacctttcacaggtcttaagacaactcgggacaggagcg--- 617
Query: 421 gctcactgctaaagagtgtgcctgctgctcttgcagagacaatccagaacccacatggag 480
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 618 gctcactgctaaag--tgtgcctgccgctcttgcagagacaatccagaacccacatggag 675
Query: 481 actcacaaccatctagtttcaagaaagccaaagcccttttttccctttttcaggtaccag 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 676 actcacaaccatctagtttcaagaaagccaaagccctcttttccctttttcaggtaccag 735
Query: 541 gcacacataaattatggtgtacatacacatatgcaggtattcaaa 585
||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 736 gcatacataaat-atggtgtacatacacatatgcaggtattcaaa 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_f23.g1 MSMg01no075_f23.g1 CHROMAT_FILE:
MSMg01no075_f23.g1 PHD_FILE: MSMg01no075_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:01 2005
(600 letters)
>mm_chr4_35259316_35260315
Length = 1000
Score = 518 bits (268), Expect = e-151
Identities = 339/380 (89%), Gaps = 30/380 (7%)
Strand = Plus / Minus
Query: 1 cacctgtggagctgttaccaccgctagttcatgtcttcaacagcctcagtttttcatctt 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 cacctgtggggctgttaccaccgctagttcgtgtcttcaacagcctcagtttttcatctt 332
Query: 61 ttaggagatagaaactttttaaacttaaactcaccaagagccattcagcatccacagtga 120
||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct: 331 ttaggagatagaaactttttatacttgaactcaccaagatccattcagcatccacagtga 272
Query: 121 gggatcagactgaatatcattctgtagcaacacaaaatgtgactgtaaagtaa------a 174
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 271 gggatcagactgaatatcattctgtagcaacataaaatgtgactgtaaagtaagagcaca 212
Query: 175 ag----------------------cataaggaatatttagccggttgtgg-cggcgcacg 211
|| |||||||||||||||||||||||| | || |||||
Sbjct: 211 aggaatatttagccaaagtaagagcataaggaatatttagccggttgtagtcgt-gcacg 153
Query: 212 ccggtaggatttgctgaaggaggcagaggcaggaggatcacgagttggaggccagcctgg 271
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ccagtaggatttgctgaaggaggcagaggcaggaggatcacgagttggaggccagcctgg 93
Query: 272 gctacacatttgctgggcagtggtggcgcacgcctttaatcccagcacttgggaggcaga 331
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gctacacatttgctgggcggtggtggcgcacgcctttaatcccagcacttgggaggcaga 33
Query: 332 ggcaggcagatttccgagtt 351
|||||||||||||| |||||
Sbjct: 32 ggcaggcagatttctgagtt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
