BAC Information

Click to search

BAC

Clone NameMSMg01-075L23
Chromosome4 (Build37)
Map Location 107,251,372 - 107,416,157
singlet/doubletdoublet
Overlap geneGlis1, Dmrtb1, LOC100039889
Upstream geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Downstream geneLOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L23.T7 (MSMg01no075_l23.b1)MSMg01-075L23.TJ (MSMg01no075_l23.g1)
ACCAG298490AG298491
length670671
length of high quality
(start - end)
101 (64 - 164)447 (77 - 523)
definitionCHROMAT_FILE: MSMg01no075_l23.b1 PHD_FILE: MSMg01no075_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:29 2005CHROMAT_FILE: MSMg01no075_l23.g1 PHD_FILE: MSMg01no075_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,416,057 - 107,416,157)(107,251,372 - 107,251,818)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAAATCCGCGGAATTCT
CTGAGATTCCCTGCACATACCACACTGGTGGTATGGGTTAGTAACATGAT
GGTAGAGCTCACTGAAGAACTAGCTGGTTCTTTTGGGCAGGAAATGGGCT
CTGGACTTGCAGGGTTAATGAGGTTGTGGCAACAGCAGAGACCTTCAGAA
TGGAACGTTAGCCTTTGCAAGGCTCTGGCTTGACAAGTTCCTGGACCACT
CAGGGGTTAGTCATGTTCAGGACTGGCTTGTTCAGCCTGTCCCAGCCACC
TTGGTCCCTTGTTTTTCCTATGAAAAAAGAAGGTTGGATAAGCATCTGTT
AGACTATCCAATCCCAGAATAGTTGACACCTGCTAGATGCGGTTGCAGAT
AGAGTCCCAGCGATGCCACCAGCTCGGTGTGTGAGACCTTGAACATAATG
AACTCGTTTCTCTGAGTCATGATCTCACAGTCCGCTCCTCATGAAGTTTT
TGTGAGGATTAAGCACTTATTTCTGGCTTTTAATATACCGTAATTACTAT
TATTCCTCGGTCTCATTATTTCTCTCTCTATCAGCCTCTCTTCACCTCTT
CTTTGTATTTGCACACGCTCCACTCCGCAAAGATTGTGTTTTTAAAAACT
AAGTATCGATAAACCTTAGA
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGACTCATAGTTACATCCC
CAATGTCCTGACTTGACCTGCTGGAGGAAAGAGTGAACCATAGTGGGGGG
AGCAGGCAGGGTCCTCCTGGACCCCAACCCTAGTTCTCTTCCAGCCATGC
TGGCCTCTTGGCTGCTTCTCAAACATGCTGAGCTCATTAGAACCACATGC
TTTCTGCATAGCTATTCCTTCTGCCCAAATGCCCCTACCCCAGTCTGACC
TTTATGCATTCAAACCCCAGCTCCTATGTTCCCTCCTCCAGGAGGCCTTC
CCTGACCTGTAGCCCACTCTCTGGTATCTGTATGAGTTCCTACTTCGCAG
CCATTAAGCTCCGGGGAAGTTCAAGACTTTTTAAGATTTTTGTTTCTTGC
TGTGTTTTCAGTGTTAGCACCAGTTCCCAGCCCATTGTAATGTGACCCAC
AGGTCACAACGAATGTCACCAAATTAGGGGAGAGTGGTCCAGAGGTGTTG
AGGGAAGGTCTTGGGAGGGGCCCAGGTAGGGTATTAGAAGGCTTATAACA
TATGTGTGTGTAAGGGACTCATCAGTGCCAGATGAGCCTGAGCCGGTGCC
TCCAGGAAGCCCAGCACCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l23.b1 MSMg01no075_l23.b1 CHROMAT_FILE:
MSMg01no075_l23.b1 PHD_FILE: MSMg01no075_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:29 2005
         (101 letters)



>mm_chr4_107415857_107416357
          Length = 501

 Score =  180 bits (93), Expect = 2e-50
 Identities = 99/101 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacataccacactggtggtatgggttagtaacatgatggtagagctcactgaagaactag 60
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301 cacacaccacactggtggtatgggttagtaacatgatggtggagctcactgaagaactag 242

                                                    
Query: 61  ctggttcttttgggcaggaaatgggctctggacttgcaggg 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctggttcttttgggcaggaaatgggctctggacttgcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no075_l23.g1 MSMg01no075_l23.g1 CHROMAT_FILE:
MSMg01no075_l23.g1 PHD_FILE: MSMg01no075_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:29 2005
         (447 letters)



>mm_chr4_107251172_107252018
          Length = 847

 Score =  864 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagactcatagttacatccccaatgtcctgacttgacctgctggaggaaagagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagactcatagttacatccccaatgtcctgacttgacctgctggaggaaagagtga 260

                                                                       
Query: 61  accatagtggggggagcaggcagggtcctcctggaccccaaccctagttctcttccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatagtggggggagcaggcagggtcctcctggaccccaaccctagttctcttccagcc 320

                                                                       
Query: 121 atgctggcctcttggctgcttctcaaacatgctgagctcattagaaccacatgctttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctggcctcttggctgcttctcaaacatgctgagctcattagaaccacatgctttctg 380

                                                                       
Query: 181 catagctattccttctgcccaaatgcccctaccccagtctgacctttatgcattcaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagctattccttctgcccaaatgcccctaccccagtctgacctttatgcattcaaacc 440

                                                                       
Query: 241 ccagctcctatgttccctcctccaggaggccttccctgacctgtagcccactctctggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagctcctatgttccctcctccaggaggccttccctgacctgtagcccactctctggta 500

                                                                       
Query: 301 tctgtatgagttcctacttcgcagccattaagctccggggaagttcaagactttttaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtatgagttcctacttcgcagccattaagctccggggaagttcaagactttttaaga 560

                                                                       
Query: 361 tttttgtttcttgctgtgttttcagtgttagcaccagttcccagcccattgtaatgtgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttgtttcttgctgtgttttcagtgttagcaccagttcccagcccattgtaatgtgac 620

                                      
Query: 421 ccacaggtcacaacgaatgtcaccaaa 447
           |||||||||||||||||||||||||||
Sbjct: 621 ccacaggtcacaacgaatgtcaccaaa 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)