CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATTTATTACTGAGGGACTCTGATATGATTGATAGCTTGTATA
ATCCCAATGATAGGACAATGGAGACAGAAATATCCCTGTGGTTGACTGGC
CAGCCACCTTAGCTTAATTGGTGAGCTCCAGTTCTCTAGAGAGACCTTGT
CTCAAAAAATATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAAAGATGATGGCAGGTGGCTCCTAAGCAATGACA
TCTGAGGTTGACCTCTGTTCTTCACAAACATGGATACCTGCACACATACA
AATGCATACATATATGCACTTATACACATACACTACAAGAAGTATAGATA
CTGAAAAGATTCTGGAATGCTATCATCTGGAGGTACCACAATATGGTGGA
CAAAAAAAGGTCATGCTGTGGGAGACCTGTGTGACCTTTCACGTGTCTTC
CCTGTGTGGTACTCAATTTTCTTTCTTTCTCCATTTTCAGCTGGGTTGGA
CTGGGTTTTTTATTGAGACAAGGATTCTCTGTGTAGCCCTGGCTGTCCTG
GGATTTGCTCTATAAACCAGAAAGATCTGCTTGTATTGAAGGCAAAGTCA
AGAGCCTGAATGAAGAAGTATCTGATGCCCTTGGCCAAGTTACCACACCA
GAAGGACAGGACTCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATAGATAAACCAGGCTGAATCATGGAGATTCTTCTGCCGCTGC
TTCCCAAGTTCTGGGGTTAAAACTTGGTGCCCTCCCTGATACCTGCCTCA
GATTTTTGTTCCCTCCAAGACAGAGTTTCTCTTTGTGGCCCTGGCTGTCC
TTGGTTTGTAGACGAGTCTGTCTATACCAGCTCAGATCTTTTTTTTTTAG
ATTCTCTATTATTAAGAATTGATGGGGCTGGAGGGATGGCACAGCGGCTG
AGAACACTGTCTGCTCTTCTAGAGATCCTGAGTTCAGTTCTCACCAACCA
CATGGCGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTG
TGGCTGAAGAGAGTGACTGTGTACTCATATAAATAAAACAGATAATTTTT
TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCGTCTGGTCTCGACCTTTG
AGATTCGCCTGTCTCTGTCCTTCACGTGATCCTATTCCCTCTTCGTTCTC
CCTCTGCTTTCCATTATTTCCATCTCTCTCTTTCCCTTTCCCTTCTTTTT
CTCTTTACCTTCCCTTTCTTCTCTCTTCTTACTTATCTCTCTCTTTCTTC
TCTCCCCTCTATTCTCCCCTTTTTTCCGCGCCTTTCCTCCCTCTCTTTTT
CGTTTCCG

Query= MSMg01no076_a10.b1 MSMg01no076_a10.b1 CHROMAT_FILE:
MSMg01no076_a10.b1 PHD_FILE: MSMg01no076_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:51 2005
         (599 letters)



>mm_chr4_122489105_122490099
          Length = 995

 Score =  953 bits (493), Expect = 0.0
 Identities = 552/595 (92%), Gaps = 37/595 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtatttattactgagggactctgatatgattgatagcttgtataatcccaatg 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaattctgtatttacaactgagggactctgatatgattgatagcttgtataatcccaatg 297

                                                                       
Query: 65  ataggacaatggagacagaaatatccctgtggttgactggccagccaccttagcttaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataggacaatggagacagaaatatccctgtggttgactggccagccaccttagcttaatt 357

                                                                       
Query: 125 ggtgagctccagttctctagagagaccttgtctcaaaaaatataataataataataataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggtgagctccagttctctagagagaccttgtctcaaaaaatataataataataataataa 417

                                                                       
Query: 185 taataataataataataataataataataataataataaagatgatggcaggtggctcct 244
           ||||||                                 |||||||||||||||||||||
Sbjct: 418 taataa---------------------------------agatgatggcaggtggctcct 444

                                                                       
Query: 245 aagcaatgacatctgaggttgacctctgttcttcacaaacatggatacctgcacacatac 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcaatgacatctgaggttaacctctgttcttcacaaacatggatacctgcacacatac 504

                                                                       
Query: 305 aaatgcatacatatatgcacttatacacatacactacaagaagtatagatactgaaaaga 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 aaatgcatacatatatgcacttatacacatatactacaagaagtatagatactgaaaaga 564

                                                                       
Query: 365 ttctggaatgctatcatctggaggtaccacaatatggtggacaaaaaaaggtcatgctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 565 ttctggaatgctatcatctggaggtaccacaatatggtggacaaagaaaggtcatgctat 624

                                                                       
Query: 425 gggagacctgtgtgacctttcacgtgtcttccctgtgtggtactcaattttctttctttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 625 gggagacctgtgtgacctttcacgtgtcttccctgtgtggtactcaattttctttctt-- 682

                                                                       
Query: 485 tccattttcagctgggttggactgggttttttattgagacaaggattctctgtgtagccc 544
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 --cattttcagctgggttggactgggttttttattgagacaaggattctctgtgtagccc 740

                                                                  
Query: 545 tggctgtcctgggatttgctctataaaccagaaagatctgcttgtattgaaggca 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggctgtcctgggatttgctctataaaccagaaagatctgcttgtattgaaggca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 995
Length adjustment: 10
Effective length of query: 589
Effective length of database: 985
Effective search space:   580165
Effective search space used:   580165
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)