BAC Information

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BAC

Clone NameMSMg01-076B09
Chromosome4 (Build37)
Map Location 109,545,573 - 109,545,994
singlet/doubletsinglet
Overlap geneFaf1
Upstream geneRab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B09.T7 (MSMg01no076_b09.b1)MSMg01-076B09.TJ (MSMg01no076_b09.g1)
ACCAG298746AG298747
length691676
length of high quality
(start - end)
491 (68 - 558)439 (56 - 494)
definitionCHROMAT_FILE: MSMg01no076_b09.b1 PHD_FILE: MSMg01no076_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:56 2005CHROMAT_FILE: MSMg01no076_b09.g1 PHD_FILE: MSMg01no076_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GATCATAATTTGCGGCGCTAAACGACTCCTATTCGAAGAGGATCCGCGGA
ATTCACTCCCTGCCTGCAGCTCTCCTTAATAGTGTCTCATGTCTCTGGCT
ATGTAACATCTTGGGAGTCTCCATTGCAACTCAGGCTTCACTTCCACAGC
TTCATGGAGTGGCATCTCATGGCTTCTAGGCTGGGACTTCTCTGTCAGGC
ATTGCTTATTAGCCTTGTGGCTCTTTGAAACTGGTGGAAGATGTCACTAC
TCATTTGCTTATGTATCTTTGCCATGTGGATGACACTGCCAGTTCATCTG
CCAGCTTGGGGTGGTCCCTCACTCCCTTGAATCACCTTAACAGCAGCTTT
TGATTGCTTCCTCCCTTGGGCCTTCCTTATTACTTAGCTCCTTTTTTGGT
CTGCATTGTAGAATGAAGATCTTTTCCCCATTCTGTAAGCTGTTGTTTTG
TTCTTTTTCTCTTTTTCAAAATGATATTTTCTTCATTTACATTTCAATGC
TATCCCAAAAGTCCCCTATACCCTCCGCCCTGCCCTGCTCCCCAATCCAC
CCACTTCCTAGTCCTGGCATTCCCCTGTACTGGGGCATATCATATAATCT
TCACAAGACTAAAGGGTCTTTCTTCTCATCGATGGCCAACTAGGCCATCC
TCCGCTACCTATGCAACTACAGACACAAGTTCTGGGATATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCTTTTACCCAGTTCACTGGTATTATTGAGCATAATTTTGTATT
CTAATAGAAAACTTCAATGAACCTCAGTGTTTATACATACTCATCTATTT
GCCATTGTTAATTAGCTTTCAATTGATTTGATTTATTTTGTTTTACACTA
TATTAAAGTTAACAGTATATTTAAGATACATCGATGAGAGAAAATGAAGG
GGCAAAAATATCTTCCCAACTTCAGTCTAGCAACTCAGCATTTAGTGAAT
GTTTGGTAATAGTTTTTTATCAGGGAAGGAGAGATAAACAAGCGGATAGA
ATAACTAGGATAGTAAAGGGAGGAATGACAAAGAAATGACTAGAATCTGA
AGACAAGTATGTAAATAGCTTGATTTTAAAAAGCACATACCAACAAACTC
ACTCTCAGATCCCTGCAAAGTCTAGGACAGTAGCTTATAGAAATGGTTTA
CGAATGCAAGTAGACTACCAAGACCATGAACACTCCAAGCATGGACAATG
AGGACTCCAGAAAGGCAAACTAGGATATGCTTTACGGACGTGTTTGCCAT
GAGATTAAGAAGCATAGGCTAAGATGAATATGTCCATCTGTCACTGGAAG
AGAGTGGCCTCAAACAGTTAACTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b09.g1 MSMg01no076_b09.g1 CHROMAT_FILE:
MSMg01no076_b09.g1 PHD_FILE: MSMg01no076_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:56 2005
         (439 letters)



>mm_chr4_109545213_109546051
          Length = 839

 Score =  756 bits (391), Expect = 0.0
 Identities = 419/439 (95%), Gaps = 17/439 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttttacccagttcactggtattattgagcataattttgtattctaatagaaaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tccttttacccagttcactggtattattgagcataattttgtattctaatagaaaacttc 723

                                                                       
Query: 61  aatgaacctcagtgtttatacatactcatctatttgccattgttaattagctttcaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aatgaacctcagtgtttatacatactcatctatttgccattgttaattagctttcaattg 663

                                                                       
Query: 121 atttgatttattttgttttacactatattaaagttaacagtatatttaagatacatcgat 180
           |||||||||||||||||||||||                 ||||||||||||||||||||
Sbjct: 662 atttgatttattttgttttacac-----------------tatatttaagatacatcgat 620

                                                                       
Query: 181 gagagaaaatgaaggggcaaaaatatcttcccaacttcagtctagcaactcagcatttag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagagaaaatgaaggggaaaaaatatcttcccaacttcagtctagcaactcagcatttag 560

                                                                       
Query: 241 tgaatgtttggtaatagttttttatcagggaaggagagataaacaagcggatagaataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 tgaatgtttggtaatagttttttatcagggaaggagagataaacaagtggatagaataac 500

                                                                       
Query: 301 taggatagtaaagggaggaatgacaaagaaatgactagaatctgaagacaagtatgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taggatagtaaagggaggaatgacaaagaaatgactagaatctgaagacaagtatgtaaa 440

                                                                       
Query: 361 tagcttgattttaaaaagcacataccaacaaactcactctcagatccctgcaaagtctag 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 tagcttgattttaaaaagcacatatcaacaaactcactctcagatccctgcaaagtctag 380

                              
Query: 421 gacagtagcttatagaaat 439
           |||||||||||||||||||
Sbjct: 379 gacagtagcttatagaaat 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)