BAC Information

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BAC

Clone NameMSMg01-076D13
Chromosome4 (Build37)
Map Location 141,421,343 - 141,558,473
singlet/doubletdoublet
Overlap geneEfhd2, Fhad1
Upstream genePadi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc
Downstream geneTmem51, 9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D13.T7 (MSMg01no076_d13.b1)MSMg01-076D13.TJ (MSMg01no076_d13.g1)
ACCAG298850AG298851
length706846
length of high quality
(start - end)
290 (69 - 358)214 (132 - 345)
definitionCHROMAT_FILE: MSMg01no076_d13.b1 PHD_FILE: MSMg01no076_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:07 2005CHROMAT_FILE: MSMg01no076_d13.g1 PHD_FILE: MSMg01no076_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,421,343 - 141,421,631)(141,558,274 - 141,558,473)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCAGTTATTTCACCAAATAACCACAGCCTGCCAGGCACTTCATATGCTC
AGCCGTCATAGTGGGTCAGGACTGGGGAGGATCACTGAAGAGGGTACTAT
AGCCTGGGACCCCAGCTTGGGAGCCACATGCCCCTTGTTTTCCTGTGTCC
CCAGCTGGACCTACACTCAAGGGTCTATGCTTCTTTTAAAACCAGAACAA
TGATCTCAGACTAAATGAGGCACACGCCATGCCCAAACTTGGATGTCACG
TTGGGTGGTGGATTCCCTGCTTTCTAGCAGCTTCACGCTGGGCCAGACCA
CACCTCATACCACAGCCTAAATCAATCAAAGGTCAATCAATTACCAGGGC
TGGGCTCCAACCCATGCTGACTCCAGTCCCCAGTGGATGATGCAGGGGCT
GGCTACAGTCCCTAATAAATATCAATTGCCAAGCCAGGTGATACAGAGCC
TAAAGAAACCTGGTACAGGCTGAGAGGTGTTCCTGTAGGAGGCGACTATT
CTCCTAAGGCCTTTAATGTGTTCATCCGCGACCACGCTATACGGTTAATT
CCTACATAAAACCGCATCTTCTGCTCATCTTGCCTCCATATTCCCACTCT
GTTGCTGCTGTTATGCTTGATTCTGATCGTTTCCTGTACTCGCTAGCATC
CACTTT
TTTTTTTATTTTNNNNTNNTTTATCNTCTATTCTTTCTTCCCTCTCTTCC
CCTTACCAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGAGGCCGAGGGCACCT
TCGTCCTTCAGGACTTTAACTCCCGCAACGGCACGTTTGTCAACGAGTGC
CACATTCAGAATGTGGCGGTGAAGCTGATCCCTGGGGACATTCTGCGGTT
CGGGTCTGCAGGGATGACCTACGAGCTGGTCATTGAGAACCCGTCCCCGG
TGAGCCCAGCCTCTATGTGGTGGTGTGTGGGCCTGTCCTCCTCCTTTTTT
CTCTTTTCCCCCCCCCCTTCCCTTCTTCTNCTTTCTCTCTTTTTCTTTCT
TCTTCTTTTTTCTCTCTCCTCCCTCCTTCCCCTTTTTTTTTCCTCTCCTC
TTCCCTATCTCCTCTTTCCTTTCTCTCCCCCCTCTTTCTCCCTCCTTTTT
CTTTCCTACCTATTTTATCTCCCTTCCCTTTTCCTACCGCTCTTCTCCTT
TTTTTTTCCCGTTTTCCCCCGCTTTTCCCCCCCTCTTCTACTCTCTCATT
TCCCTGTTTCTCATTCCCTAAATCCTACTACATACTCTCTCTTTACTCCC
TTGTCCCTATCCTCTTTTTCTCCTTTCCCCTGAATAATCATTTTTCTTCT
TTCCTTTCCCCCCTCTTTCCACCCTTCTTCTCCTATTTTCCACTTATCCT
ATTCCTCTGCCTCGTACCTAATTGTTCTTCTCTCCTTCCCCATTTCCCCC
CCCCCCTCCCATCATTTTAATATTCCCTATATATCTCACCCCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d13.b1 MSMg01no076_d13.b1 CHROMAT_FILE:
MSMg01no076_d13.b1 PHD_FILE: MSMg01no076_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:07 2005
         (290 letters)



>mm_chr4_141421143_141421832
          Length = 690

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaccacagcctgccaggcacttcatatgctcagccgtcatagtgggtcaggactgggga 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 201 taaccacagcctgccaggcacttcatatgctccgccgtcatagtgggtcagggctgggga 260

                                                                       
Query: 61  ggatcactgaagagggtactatagcctgggaccccagcttgggagccacatgccccttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatcactgaagagggtactatagcctgggaccccagcttgggagccacatgccccttgt 320

                                                                       
Query: 121 tttcctgtgtccccagctggacctacactcaagggtctatgcttcttttaaaaccagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctgtgtccccagctggacctacactcaagggtctatgcttcttttaaaaccagaac 380

                                                                       
Query: 181 aatgatctcagactaaatgaggcacacgccatgcccaaacttggatgtcacgttgggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgatctcagactaaatgaggcacacgccatgcccaaacttggatgtcacgttgggtgg 440

                                                            
Query: 241 tggattccctgctttctagcagcttcacgctgggccagaccacacctca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggattccctgctttctagcagcttcacgctgggccagaccacacctca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no076_d13.g1 MSMg01no076_d13.g1 CHROMAT_FILE:
MSMg01no076_d13.g1 PHD_FILE: MSMg01no076_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:07 2005
         (214 letters)



>mm_chr4_141558074_141558687
          Length = 614

 Score =  387 bits (200), Expect = e-112
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgaggccgagggcaccttcgtccttcaggactttaactcccgcaacggcacgtttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacgaggccgagggcaccttcgtccttcaggactttaactcccgcaacggcacgtttgtc 341

                                                                       
Query: 61  aacgagtgccacattcagaatgtggcggtgaagctgatccctggggacattctgcggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aacgagtgccacattcagaatgtggcggtgaagctgatccctggggacattctgcggttc 281

                                                                       
Query: 121 gggtctgcagggatgacctacgagctggtcattgagaacccgtccccggtgagcccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gggtctgcagggatgacctacgagctggtcattgagaacccgtccccggtgagcccagcc 221

                               
Query: 181 tctatgtggtggtgtgtggg 200
           ||||||||||||||||||||
Sbjct: 220 tctatgtggtggtgtgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)