Query= MSMg01no076_f21.b1 MSMg01no076_f21.b1 CHROMAT_FILE:
MSMg01no076_f21.b1 PHD_FILE: MSMg01no076_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:19 2005
(459 letters)
>mm_chr4_14140569_14141427
Length = 859
Score = 864 bits (447), Expect = 0.0
Identities = 455/459 (99%), Gaps = 3/459 (0%)
Strand = Plus / Plus
Query: 1 ccttactatgtgcaactatcatatcccatacaaattttatgataggaataaatcgactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ccttactatgtgcaactatcatatcccatacaaattttatgataggaataaattgactgt 263
Query: 61 cttctgcttttaactggttttagagataatgtctcaatgtgttggcttggaactcctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttctgcttttaactggttttagagataatgtctcaatgtgttggcttggaactcctatg 323
Query: 121 taggccagactgacctatgactcactagatctgagcctgtctccagagtgctaagattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taggccagactgacctatgactcactagatctgagcctgtctccagagtgctaagattga 383
Query: 181 aagcatgtactaccacacatggcttataaatttgataaactataatagattgtaatgcag 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagcatgtac---cacacatggcttataaatttgataaactataatagattgtaatgcag 440
Query: 241 atgcaagttggctatatgctcatattttatcaaattgaatgaagcaactaatatgttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaagttggctatatgctcatattttatcaaattgaatgaagcaactaatatgttcta 500
Query: 301 cttagaacaccagtgaagacagatgtgggcatttccctgcaggaggatagagctctttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagaacaccagtgaagacagatgtgggcatttccctgcaggaggatagagctctttgg 560
Query: 361 gatacccaggagtggtgttcctgaatcacatggtattctatttctgaattttgagtaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacccaggagtggtgttcctgaatcacatggtattctatttctgaattttgagtaaac 620
Query: 421 gccacattgtgttcctaatgactctaactagttaggcct 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccacattgtgttcctaatgactctaactagttaggcct 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_f21.g1 MSMg01no076_f21.g1 CHROMAT_FILE:
MSMg01no076_f21.g1 PHD_FILE: MSMg01no076_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:19 2005
(373 letters)
>mm_chr4_14302543_14303315
Length = 773
Score = 714 bits (369), Expect = 0.0
Identities = 372/373 (99%)
Strand = Plus / Minus
Query: 1 tataggctgcatgtttttagtttaaaggagagatagaatgaatcgcagtctctaaggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tataggctgcatgtttttagtttaaaggagagatagaatgaatcgcagtctctaaggagt 514
Query: 61 atgacatttatttaagactttctaggtgggaagaaaacatgcccttggttttcaaatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atgacatttatttaagactttctaggtgggaagaaaacatgcccttggttttcaaatcct 454
Query: 121 gaacaagggacaattaaacagttgtgagcctagtcccatcatcagcaagcccagcactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaacaagggacaattaaacagttgtgagcctagtcccatcatcagcaagcccagcactga 394
Query: 181 aagttttgctgaatgtgtcaagtttgagtatgctccaggctcattctgataggcactatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagttttgctgaatgtgtcaagtttgagtatgctccaggctcattctgataggcactatc 334
Query: 241 acattttgttcacacagcgccacatgttcacactgacttatctaaaatccatgcacttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acattttgttcacacagcgccacatgttcacactgacttatctaaaatccatgcacttta 274
Query: 301 acgctttggccggctctccctgaggatcacacatgcttcattcacaggctgaatgctcca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 273 acgctttggccggctctccctgaggatcacacatgcttcattcataggctgaatgctcca 214
Query: 361 tatgtgtcttacg 373
|||||||||||||
Sbjct: 213 tatgtgtcttacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
