BAC Information

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BAC

Clone NameMSMg01-076L11
Chromosome4 (Build37)
Map Location 124,692,558 - 124,692,677
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1
Downstream geneGnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L11.T7 (MSMg01no076_l11.b1)MSMg01-076L11.TJ (MSMg01no076_l11.g1)
ACCAG299226AG299227
length778796
length of high quality
(start - end)
187 (44 - 230)121 (135 - 255)
definitionCHROMAT_FILE: MSMg01no076_l11.b1 PHD_FILE: MSMg01no076_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:47 2005CHROMAT_FILE: MSMg01no076_l11.g1 PHD_FILE: MSMg01no076_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATTTCCGATCCCTGTGACTTCCATCTTCTTGTCCTGTTTCCCGG
GTCTGAACCTGTGCCTGCCTGGAGGCAGTTCTGTGAATCTCCTTCTCCCT
GAGTTTGTGTGTGTGTCTATCTGCTGTAGGAGCTATGTCTGCCTATCGTG
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCTGTCTTTCTT
CTCTTTCCCTTTTCTCTTTCTTTTTCCTTCTTTCTTCTTCTTCCTTTTTT
CTCTCTATTCTTTTTTTTTTTTTTTTATCTCTTACCTCACTTTCCCCTTC
CACCACTATTTTTTTCTTCCCCTTTCCTCTCCTTCTTCTTCTTCTCTTTC
TTTTTCTTTTTTCCTCTTTCCTCTTTTTTCCCCCACTCTTCTCTCTTTCG
TCCTCCCTTTTCCTTCTTCCCTTTCTCCTCTTTCTGTTTTCTCATCCGCT
TTTCTTTCTTATCTTTCCATTTTTTTCTATTTCTACTCATTTCTCCTTCT
TCCTCTTATTTTTTTCTTCTTCTCCCCCTCTCAAATCCTTCTTTTTCATT
ATTTCCCTATTCTCTCTCCCTCTCTCCACTTTCCCTCTGCTATTCCTTTC
TTTTTACCTCCATTTTTTCTTAATCTCTTACTCTTCCCTTTTTTTTATCC
CCCTTTCTTTTTCTTTCTCTCTTTCTCCTCCTTTCCTTTTATCTTACCTT
ATTCTTTACCTCTTCCCTTCTTCCTCCT
TTTTTTTTTCTTNNTNTTTTTTTTTTTTTTTTTTCTTTTCTCTCTTCATC
TTCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCAGGGCCAGCACTAAG
GCCCCGCTCCACATCCTTAACCCAGGGCCAGGCCCGGAGGCGTTGGCTTT
TTGCCTCACAACCCTCCAGCTATGGGTCTGATGTGCAGTGGAAACCTTCA
TGGTGGTAGAGAATGGGGAAATGGCCTTCAAGAACAGGCTCTATCTGGCA
AGATTACATGAACTCATTGCATAGAGCAGGCGCACGCTCTGCTGTAGGTG
GAGGTGATAAGAACACAAGTCCTATTCTAAGGAGGAGCTGACCTGAAGAC
ACACCACCTTGAGGCACTGCTGATACCTTATCAGTCTTGATCGCAGCTGA
GGTGTTCCTCCTCGTTGCACGCCCCTGATTCGCCGCGTTCTACTTCCTGG
CTTTTTCCTACAACCATCCTCTACATGCTCTCCTATTTATGCCGTTTTCC
CCGCGTTACACCCCCTCACTTGTGGCATTCATTTTATCTTGCCTTGACCG
AAAAGACTCTTCGTACCGCCTTTTCACCCACCTATTCTTGCCTTCCCCAA
TTTCGCTTTCCTCTTTCCTTTCCCCCCCTTTCCTGCTTCATCTTTATTTT
TCCCCCGTCCTCCCATCCCTTCATCCATTACCTATACTATCCATCCCTAT
TCTCTACCACCCATTATCTTTAATTTCTTTTATATCCCTCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l11.g1 MSMg01no076_l11.g1 CHROMAT_FILE:
MSMg01no076_l11.g1 PHD_FILE: MSMg01no076_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:48 2005
         (121 letters)



>mm_chr4_124692358_124692877
          Length = 520

 Score =  195 bits (101), Expect = 6e-55
 Identities = 116/121 (95%), Gaps = 1/121 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggccagcactaaggccccgctccacatccttaacccagggccaggcccggaggcgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct: 201 cagggccagcactaaggccccgctccacatccttaacccagggccaggccc-gaggtgct 259

                                                                       
Query: 61  ggctttttgcctcacaaccctccagctatgggtctgatgtgcagtggaaaccttcatggt 120
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctttttgcctcagagccctccagctatgggtctgatgtgcagtggaaaccttcatggt 319

            
Query: 121 g 121
           |
Sbjct: 320 g 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 520
Length adjustment: 8
Effective length of query: 113
Effective length of database: 512
Effective search space:    57856
Effective search space used:    57856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)