BAC Information

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BAC

Clone NameMSMg01-076N13
Chromosome4 (Build37)
Map Location 67,908,225 - 67,908,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N13.T7 (MSMg01no076_n13.b1)MSMg01-076N13.TJ (MSMg01no076_n13.g1)
ACCAG299326AG299327
length694760
length of high quality
(start - end)
309 (125 - 433)171 (134 - 304)
definitionCHROMAT_FILE: MSMg01no076_n13.b1 PHD_FILE: MSMg01no076_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:58 2005CHROMAT_FILE: MSMg01no076_n13.g1 PHD_FILE: MSMg01no076_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATAATTTGCGGCGCTATACGACTCCTATTGCAAGAGGATCCGCGGA
ATTCTCTCATTTTCTGGAATTCTCTCTCAGAATGACCTTCACTCATTTCA
GTTCTAAATGTTGAATGAAGTACGTGATGAATTAGATCTTCTGCCTCCCT
CAGGCTATGGTACAGCTGTGACTGCCGATGAAGTTACTGATTCTAATACC
ACGTTGTCTCTTAGCACACTGATATTTTGATGTGTTTCTGACAATGACCA
CACACTGGGGTGCCATTTAGAGGATCTCTGAAAACTTCAATCTATTCAAA
TTGCAAAATCAGTTTCACTGTATTTGTGCAGCTTTGTCCTTTGAAAGCCA
CATTCTTGGCAAGTGAGCATGATTTCCAGAGAAAACTTTCTCTCTTGAAC
ATGGTGGCATTACATATTCTCTTCCTCTTTAAAACACAAACAGGTAATTT
TAGGACAGCACTGATAGATGTTTCTGTCTTCCTAATTGGAACTCCTTGTT
CATCTCATCCAATCTGTTTTCTCATCTATGAAAACAATATCTAATTACTT
ATTTAAATATCATCGCCCTCTCCTATAGATCTCACAAACCTTATTGACAA
TTTTATCTAAATCTCCCTCAGAATCTCTATACATACGGATTTTTCTTGAT
ATACTCCGTACTTTACTACCCCTTTTTTGTCTTGCTTATCTGTA
TCTTTTCTTCCTNNNCTCCTTTTCCTTCCTTTCTTTTTCCTTCTCTCCCC
TTTCTCTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCGTCATTTAAAAT
ACAAAATAAAGTGCCAGGCGTGATGGTGCACGCCTTTAATCCCAGCACTT
GGGAGTCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGA
GTTCCAGGATAGCCAGGGCTATAGAGAAACCCTGTCTCGAAAACAACAAC
ATCCACTAACAAAAACACAATCAACAAACCCCGATCTAATGAATATGTTC
AATTCTCACGATATATATAATGTGGCTAATGTCTCTACCTAGAGAGGAAA
AGTAGAATTGCATGAATAATACTCCTAAATAATAAACAAAACATGTCATT
TGACAAACTGACATGAACCAGGAAAGACACATCATTCCTAGGCTCCTAGG
ATTCTCAAAGAGTTTAGTGCCGTTCACGGATTCTTGATATATTGCCCTAT
GACCCTTTGCATAACAATGAGATATCTTTCCCAAAATTTACATACTATTA
AAGCTCTTTTGAGATGCATTACAAACCCCATGTTGACCTACCTATTCTTT
CCGCACCTTCCCCCCCTTCCCATTTAACATACCCAGTCTGGACCTCAGGT
TCCAATCTGTCTTTGCTTTTCCACGCTCGGCTTTCTTTGGCTTCCATAAT
TCTCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n13.b1 MSMg01no076_n13.b1 CHROMAT_FILE:
MSMg01no076_n13.b1 PHD_FILE: MSMg01no076_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:58 2005
         (309 letters)



>mm_chr4_67908025_67908735
          Length = 711

 Score =  528 bits (273), Expect = e-154
 Identities = 301/311 (96%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgaattagatcttctgcctccctcaggctatggtacagctgtgactgccgatgaagt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgatgaattagatcttctgcctccctcaggctatggtagagctgtgactgccgatgaagt 260

                                                                       
Query: 61  tactgattctaataccacgttgtctcttagcacactgatattttgatgtgtttctgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgattctaataccacgttgtctcttagcacactgatattttgatgtgtttctgacaa 320

                                                                       
Query: 121 tgaccacacactggggtgccatttagaggatctctgaaaacttcaatctattcaaattgc 180
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tgaccacacactggggtgtcatttagaggatctctgaaaacttcaacctattcaaattgc 380

                                                                       
Query: 181 aaaatcagtttcactgtatttgtgcagctttgtcctttgaaagccacattcttggcaagt 240
           |||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatcagtttcactgaacaagtgcagctttgtcctttgaaagccacattcttggcaagt 440

                                                                       
Query: 241 gagcatgatttccagaga--aaactttctctcttgaacatggtggcattacatattctct 298
           ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gagcatgatttccagagagaaaactttctctcttgaacatggtggcactacatattctct 500

                      
Query: 299 tcctctttaaa 309
           |||||||||||
Sbjct: 501 tcctctttaaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 711
Length adjustment: 9
Effective length of query: 300
Effective length of database: 702
Effective search space:   210600
Effective search space used:   210600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)