BAC Information

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BAC

Clone NameMSMg01-078E11
Chromosome4 (Build37)
Map Location 132,164,694 - 132,165,115
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078E11.T7 (MSMg01no078_e11.b1)MSMg01-078E11.TJ (MSMg01no078_e11.g1)
ACCAG299652AG299653
length696687
length of high quality
(start - end)
268 (51 - 318)426 (83 - 508)
definitionCHROMAT_FILE: MSMg01no078_e11.b1 PHD_FILE: MSMg01no078_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:34 2005CHROMAT_FILE: MSMg01no078_e11.g1 PHD_FILE: MSMg01no078_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGTCACCCTAGCTAGCAGTGAGTTTTTGCCATATCGCTT
TGTGCTCCTGCTGGATCACACACACGCAGGAGCTATTTGGATCCTCGAAT
GAAAGACACACGCACACACATCAGCTTATTTTTTTTTTTTTAACAGATCT
TGCCTGAGTTTATTTGTAAGAATGGCATAGGACACTGGTCATCTGCAAAT
AGTGTGTGGGGAGGTGTGTCACAGCAGTCCGTCTGTCTTCACACTGGCAG
GAGCCTTTTCTATGGGGCCTTCACAGGGGCCTGGGCACCTTTGGGGGCCT
GAGCACCTTTGGGAGCCTGGGCTGGAGCTGAAGCCTGGGCCTTAGCTGGA
GCTTTGGCCCCTGCCCTGCTTTGGACCTTAGGCTTCGCTTGGCAGAGCCT
CTGATCCTTGGTCATGTAACTTCTAATCCGTTTCTCACGTTTATCGTGAT
CCATGAATGCCTGCCGTTTGAGCTCGTTCCCCTCCTTGACTTCCTTGTTT
CTGCTGCTATGAAGCTTCCCCAGTGCCCCTGACGCTTCTCCGCCTCGAGA
ACCCCCTGACCCTTGTCTTTGCTTGTTTACTTTCACTTCAACTTACTATT
CCACAGTCTTCCCTTTTCAACATATTCCCCACTCCCCCTCACCCAC
CGTTTGCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTGGGACTGTTAA
CAGGTCACGGGGAGCTGGGAGGTGACACACCTCAGGCTGGGGCAGCCTTT
TGTGTTACACGACTGTGCATCTCTCAAGGCAGAGAGAGGATCATGAAACA
GAGTTATAGAGAACATGAAACACCAGAGGCTTGGAGGAAGACAGGCAGAG
AAACTTTAGCCTCGGATGTCAGTTCTAGTCCATTTTCTGTCATTGTCACA
GAATATCTGAGTGTGGGGCTGGAGAGATGGTCCAGGGGTTAAGAGCACTT
TCTGCTCTTACAGAGGACCAAGTTCAGCTCTCATCACCCAGGTCAAGTGA
CTAACTACAACCTGTAGCTCCAGCTCTATGGGATCCAGTGCCTTCTAGCC
TCCACTGGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTCTG
TCTCTGTCTCCCCCTTTCTCTCTCCATACACACACCTTTCTCTTTCTCAT
ACATACACCATTTTTAACACATTTTCTCTCTCTCACACACACCTTCTCCT
CAGCCTCTTCTGCCTCCCCGCCTTCTCTGTCCCTCTGTCTCCCTCTCTTC
TTCATACACCGTTCTTATCGCCTTCCCCTGGCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_e11.g1 MSMg01no078_e11.g1 CHROMAT_FILE:
MSMg01no078_e11.g1 PHD_FILE: MSMg01no078_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:34 2005
         (426 letters)



>mm_chr4_132164684_132165509
          Length = 826

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/426 (98%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttctgggactgttaacaggtcacggggagctgggaggtgacacacctcaggctgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 attttctgggactgttaacaggtcacggggagctgggaggtgacacacctcaggctgggg 373

                                                                       
Query: 61  cagccttttgtgttacacgactgtgcatctctcaaggcagagagaggatcatgaaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagccttttgtgttacacgactgtgcatctctcaaggcagagagaggatcatgaaacaga 313

                                                                       
Query: 121 gttatagagaacatgaaacaccagaggcttggaggaagacaggcagagaaactttagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttatagagaacatgaaacaccagaggcttggaggaagacaggcagagaaactttagcct 253

                                                                       
Query: 181 cggatgtcagttctagtccattttctgtcattgtcacagaatatctgagtgtggggctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cggatgtcagttctagtccattttctgtcattgtcacagaatatctgagtgtggggctgg 193

                                                                       
Query: 241 agagatggtccaggggttaagagcactttctgctcttacagaggaccaagttcagctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 192 agagatggtccaggggttaagagcactttctgctcttacagaggaccaagttcagttctc 133

                                                                       
Query: 301 atcacccaggtcaagtgactaactacaacctgtagctccagctctatgggatccagtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atcacccaggtcaagtgactaactacaacctgtagctccagctctatgggatccagtgcc 73

                                                                       
Query: 361 ttctagcctccactggcatctctctctctctctctctctctctctctctgtttctctgtc 420
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ttctagcctccactggca----tctctctctctctctctctctctctctgtttctctgtc 17

                 
Query: 421 tctgtc 426
           ||||||
Sbjct: 16  tctgtc 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)