BAC Information

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BAC

Clone NameMSMg01-078F04
Chromosome4 (Build37)
Map Location 34,741,756 - 34,742,087
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F04.T7 (MSMg01no078_f04.b1)MSMg01-078F04.TJ (MSMg01no078_f04.g1)
ACCAG299686AG299687
length683688
length of high quality
(start - end)
335 (63 - 397)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no078_f04.b1 PHD_FILE: MSMg01no078_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:37 2005CHROMAT_FILE: MSMg01no078_f04.g1 PHD_FILE: MSMg01no078_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATAATTTGCGGCGCTAAACGACTACTATTCGGAGAGGTCCGCGGAA
TTCAGTGGATCATATACTGTAAGAGGCTAACCTCACACTGTGAGACTTGG
GTTTAATCTCCAGCGTTTTCAACAAGAAAAACTGCTTGAGACAAAGCCAT
CTCAGCTGCATCACTCTTCAACATTCTCAAAGATTCTCTAGTCTGATAAT
TTCTAATCTGGCAATTGGGTGTTGGTTTAAACAACAGTCCTCACAAAGCA
CCCTGGCACATGCTAACAGAGAAGTTAGCATTCTGACAAGGAGAGAGAAG
CTGAACCTAAATTCTCATGCTGTGACGTGATAAATGTATCTGCAAGACTC
CACTCTCCTGGTGGCTTTGCACAGCACTCCCTGGATGAGGTGCATGCTCA
AACATAGCAAGGACTCTAACAGGGAGCAAGGGAGAGCTTGCTGACTCAAG
AGCATCGGTTTTTCTGTGGGTCTGCATGTATTTTGTAATCTTTTGTGTTC
CAGGAATAGTGCCCCATTTTATTTTTTAGGAAGCTGACAATTTTATTGAT
CTTTTGTGTATTAACTAAAGTGAATTGTGCTAAGGTTCGATCACATAAGT
CTAGCACTTCTTAATTGCGGTTTCGCTTATGAACCGCGAAAAAAACCTTA
TACATAAAGACTGCCAAGCTTGCCCTACACCTG
NCCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGAGAAATCAGGAGTACTGTTTATTG
TAATATTTTGAATTAACAATCTGTGTTTCTGGTCAGTGTGGCTTTGAGGA
ATCAGCTGTGATTAAGAGACCAGAATCATTCAGTTGAAGCATTATTGTTT
TACTCTGCCAATCAATTCTGGTTACCTGGTTCATTACTGAGGAAGCCAAG
GCAGGAACTGATGCAGCGGCCATGGAGGGGTACTGCTTACTGGCTTGCTC
CCTATGGCTTGCTTGTTCAGTCTGCTTTCTTATATACCTAGGACTTCCTG
CCCTTGTCAGTCATCAGTCAAGTCAGTATCCCACAGGTCTGCCTGTATCT
ACTCCGATGAGCACAGTATCTCAACTGAGATTCCCCATACTCCTGCGAGC
GTAGCTCGTGTTAAGTTTTACAGAGGACCTGCCAGTCTCGTGTATCATGT
TGTCCTTGACTTCACTTCGTCCTGATTTGTTCTCATTGTCCATCCTCATC
ACTATGGCTACCTTTCATAATACTTAATTGATGTTTTCTCAGCTTTTCGC
TATATATACTTCTCCTGCTCTTCCTTCGATTGCTCGCCACGGTGTACTCT
CTCTTCTCCTTTATGAAGCCTCATTTTCCTATTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f04.b1 MSMg01no078_f04.b1 CHROMAT_FILE:
MSMg01no078_f04.b1 PHD_FILE: MSMg01no078_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:37 2005
         (335 letters)



>mm_chr4_34741556_34742290
          Length = 735

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatactgtaagaggctaacctcacactgtgagacttgggtttaatctccagcgttttcaa 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 532 tatactgtaagaggctaacctcacactgtgagacttgagtttaatctccagcgttttcaa 473

                                                                       
Query: 61  caagaaaaactgcttgagacaaagccatctcagctgcatcactcttcaacattctcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caagaaaaactgcttgagacaaagccatctcagctgcatcactcttcaacattctcaaag 413

                                                                       
Query: 121 attctctagtctgataatttctaatctggcaattgggtgttggtttaaacaacagtcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attctctagtctgataatttctaatctggcaattgggtgttggtttaaacaacagtcctc 353

                                                                       
Query: 181 acaaagcaccctggcacatgctaacagagaagttagcattctgacaaggagagagaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acaaagcaccctggcacatgctaacagagaagttagcattctgacaaggagagagaagct 293

                                                                       
Query: 241 gaacctaaattctcatgctgtgacgtgataaatgtatctgcaagactccactctcctggt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 292 gaacctaaattctcatgctgtgacatgataaatgtatctgcaagactccactctcctggt 233

                                           
Query: 301 ggctttgcacagcactccctggatgaggtgca 332
           ||||||||||||||||||||||||| ||||||
Sbjct: 232 ggctttgcacagcactccctggatggggtgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)