BAC Information

Click to search

BAC

Clone NameMSMg01-078J15
Chromosome4 (Build37)
Map Location 147,663,188 - 147,663,556
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
Downstream geneUbiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078J15.T7 (MSMg01no078_j15.b1)MSMg01-078J15.TJ (MSMg01no078_j15.g1)
ACCAG299898AG299899
length731706
length of high quality
(start - end)
---357 (71 - 427)
definitionCHROMAT_FILE: MSMg01no078_j15.b1 PHD_FILE: MSMg01no078_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:58 2005CHROMAT_FILE: MSMg01no078_j15.g1 PHD_FILE: MSMg01no078_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGCCCNNNNNNNNNNNNNNNNNTTAACCCAAACCAAAAAAAAAACC
ACAAANNNAAACCAAANACNCCCACATNAAAAAAAAAAACACCANACAAN
NNNNCCCNNNNTTTNNNNNNNNNNNNNNAAANNNNNNCCCCCCCCCAACA
CTCCTCTTCCCCNNCCACAAAANAAAAAAAAGAGAAACCCCCCNCACAAA
NNACCCCCACCACCCCANCTCNNNNNNNNNNNCCACNNNNAAATACACAA
CCCAAAAAGGCAGGCTGGGGGCGACCCGCCCCCNNNTACANNNNANNAAA
AAACCCAATAANNNAAAAACAAAAAAAACAAAAAAAAAAACGAAGGAATA
AAAACAAAACCCCCCCCNCNNNCNNNNCCCCACCCNNTTACCCTAACTTA
GCTTATTTTACCCTTCTAAACCCCACACATTCCCCAGCCCCGCCCCTCCC
CCTAAACAACCCANNNNNNNNNNNNCCAAANNNANNNAAAAATACCCCCC
CCTCATGCAATATATANCCCTAATCACAAACACTACAAATAACAAGAACA
CGGGAAATAACAAAAAATCAAAAACAACNNAAAACAAACCCAAACNNAAA
AAAGGNAANANCAAAAGAAAGAGCCACGCCCTCCGACAATCTCCNACCCC
CCCCGCGCGGGGGGGCTCCCTATATTCTTTTCCCCCTTCCACATCAACAC
CATCCCCTAAAGCCGCCTCGCAAAATTCCAA
CATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGCAGATCTTCTGACAGACTTGATAGCT
GGCCAGTGGGTCCCCTGAAAACCCATTTCTGAGTATGTGGAGCAGGGACG
AGAACACCTGGGTAGAAACATTGGCTCTGGTCATTTGCATCTGCACAGAT
GAGTTCCGGGGCATCCAGGGTCATAAGTAGCTAAATGTCCACCTGACCGC
CAGCCAGTGAATGCAGTCCCCAGGGACTGTGTCTGAGAAAGCTGGACGGG
TGCTACAGGATTTTCCTGTAGAACCCCAAAGTGAGAGGGGTTCAGAGAAC
TCCCAAGCTGCCCTCTTAATTAAAACTATGTATGTATGTATGTATGTATG
TATGTATGGCATGCGCGTTTGGAGGGGATGTTCTATTCTCCCCCTCCTTC
TCTTTCCTTCTCTATTTCACCATGACTTTTCTTTCTCATTAATATACTTT
TTATTCTCTCTTGTCTCGTATTCATCTTTCCCTCTCCTCTATAACTTATT
ATCTTTATTTCTCCATCTTCGCGATTATGTTTACCATTCCTATTTCTTTT
TTTATTTTTTCCTTTTTCCCTTTTATTCTTTCTCCTCCTTCGCTACCCCC
TTCCTATCCGAGCTAATTTGTCTTTTACATCTCCGATTCGTTTCCCTCGT
TGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_j15.g1 MSMg01no078_j15.g1 CHROMAT_FILE:
MSMg01no078_j15.g1 PHD_FILE: MSMg01no078_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:58 2005
         (357 letters)



>mm_chr4_147663051_147663807
          Length = 757

 Score =  594 bits (307), Expect = e-174
 Identities = 348/369 (94%), Gaps = 12/369 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcagatcttctgacagacttgatagctggccagtgggtcccctgaaaacccatttct 60
           ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 506 actgcagatcttctgacaggcttgatggctggccagtgggtcccctgaaaaaccatttct 447

                                                                       
Query: 61  gagtatgtggagcagggacgagaacacctgggtagaaacattggctctggtcatttgcat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagtatgtggtgcagggacgagaacacctgggtagaaacattggctctggtcatttgcat 387

                                                                       
Query: 121 ctgcacagatgagttccggggcatccagggtcataagtagctaaatgtccacctgaccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgcacagatgagttccggggcatccagggtcataagtagctaaatgtccacctgaccgc 327

                                                                       
Query: 181 cagccagtgaatgcagtccccagggactgtgtctgagaaagctggacgggtgctacagga 240
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 326 cagccagtgaatgcagtccccagggactgtgtttgagaaagctggacgggtggtacagga 267

                                                                       
Query: 241 ttttcctgtagaaccccaaagtgagaggggttcagagaactcccaagctgccctcttaat 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 ttttcctgtagaaccccaaagtgagaggggttcagagaactcccaaactgccctcttaat 207

                                                                       
Query: 301 taaaactatgtatgtatgtatgtatgtatgta------------tgtatggcatgcgcgt 348
           ||||||||||||||||||||||||||||||||            ||||||||||| | ||
Sbjct: 206 taaaactatgtatgtatgtatgtatgtatgtacgtatgtatgtatgtatggcatgtgtgt 147

                    
Query: 349 ttggagggg 357
           |||||||||
Sbjct: 146 ttggagggg 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)