BAC Information

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BAC

Clone NameMSMg01-078K01
Chromosome4 (Build37)
Map Location 49,230,728 - 49,230,942
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K01.T7 (MSMg01no078_k01.b1)MSMg01-078K01.TJ (MSMg01no078_k01.g1)
ACCAG299918AG299919
length747707
length of high quality
(start - end)
219 (47 - 265)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no078_k01.b1 PHD_FILE: MSMg01no078_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:00 2005CHROMAT_FILE: MSMg01no078_k01.g1 PHD_FILE: MSMg01no078_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAATGGTTGTGATCTGAGTTTCCCAGGCTTTGTCAGCCTGTGA
GCATTAATGGCAGGCCTCATGGTATTGATATGACCCGCTATGCCACTGAC
AGTTGATAACATCTGGACTACTAGTACAGGATTCTAACAGCCCCACAGGT
ATGCCTGGAATTTCTATCTTCACTCATGAAGGAGTCTCCTTTATATTGGA
TGGTTGGTTGGTTGGATGGTTGAATGAATATTTTTTTTATTATCTTTTAT
ACTTACCCCCCCCTTCCCCCTTACTTTTCACCTTTCTTATCCCTTACTTT
TTTTTTCCCCCCTTCCCCATACTCTATTCCTCTAACATTAAACTACTTAC
CCTTATCCCCCTTTCCATTTTCTCTCTTATCTCTTTTACTCCCACTCTAC
TATGACCTTTATTCATTTATTTACACTATTCCCTTCTTTTCCCCTTTTCT
ACTTCCCTACTCCCTCTACTATCAACATTCTCAGCTTCTCTTTTTTTTCT
TCCTACCTTTTCCTCTCCTTCCTATTACTATTTTCTTCTTTCCTTCTTCA
ACTTCCTCTTAACCATTCCTCTTCATTATATCTACTTACCACGAACACTA
TACTCTTTCCTTTTTTTCTTTTTATGTTTTTATATTTCCCTTTTTTTCTC
TTATTTTCCCATTTTTCCTATTTTTATCCTCCCTCTTTTTCTCCTCA
CCTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAG
AGAAACACAGTCTCGAAAAACAAAAATCAAAAACAAACAAACAAATTAGC
CATATTGCTTCTGCAGCGTTCTGTGGAGAGAAACTATGCTTTTCCCTTTC
CTAATAAGGTAGTTGTTCAGGATCAAACCATATGCCAATAAGTAGATCTT
TTTAAGATACTAGAAGGCATTTATTAAGTTCGTTGACATCCAAATTTCAA
AATTCTAAAATAATGGTGTGATTTAAATAATGTGCATGGGAATACATTTA
ATATGCACGGGGATATATTTTCCCACTTCTTTGTCTTTTAAGAATCTAGA
GTTTTAAAGTTCCACAATACCTTGTCCTTGAGAATTAATAATATGTTGAC
AAAACATCACAAATACTTGACTGTTATAGTAAGTATTAATGCTACATAGG
CAGTGACTAATTGCACTTTCAACTGCGATCCTTTTTTTTTAAATTTTTTT
TCATTAGGTATTTCCTCATTCTAATTTCCAATGCCATACCAAAAGTCCCC
CACACCCCCCCATACCCTCCCTACCCTTTTATTTCCCCCTTTTTGTTCCC
GGCGTTTCCCTTGCATTGTCCTAATTTTGTTTGCTAGTCCCATGCCCCTC
CTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k01.b1 MSMg01no078_k01.b1 CHROMAT_FILE:
MSMg01no078_k01.b1 PHD_FILE: MSMg01no078_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:00 2005
         (219 letters)



>mm_chr4_49230524_49231142
          Length = 619

 Score =  371 bits (192), Expect = e-107
 Identities = 210/216 (97%), Gaps = 2/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatggttgtgatctgagtttcccaggctttgtcagcctgtgagcattaatgg 64
           ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 205 gaattcagaatggctgtgatctgagtttcccaggctttgttagcctgtgaacattaatgg 264

                                                                       
Query: 65  caggcctcatggtattgatatgaccc-gctatgccactgacagttgataacatctggact 123
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 265 caggcctcatggtattgatatgacccag-tatgccactgacagttgataacatctggact 323

                                                                       
Query: 124 actagtacaggattctaacagccccacaggtatgcctggaatttctatcttcactcatga 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 actagtacaggattctaacagccccacaggtgtgcctggaatttctatcttcactcatga 383

                                               
Query: 184 aggagtctcctttatattggatggttggttggttgg 219
           ||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggagtctcctttatattggatggttggttggttgg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)