BAC Information

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BAC

Clone NameMSMg01-078P21
Chromosome4 (Build37)
Map Location 109,920,378 - 109,920,822
singlet/doubletsinglet
Overlap geneElavl4
Upstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078P21.T7 (MSMg01no078_p21.b1)MSMg01-078P21.TJ (MSMg01no078_p21.g1)
ACCAG300192AG300193
length564691
length of high quality
(start - end)
---445 (149 - 593)
definitionCHROMAT_FILE: MSMg01no078_p21.b1 PHD_FILE: MSMg01no078_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:29 2005CHROMAT_FILE: MSMg01no078_p21.g1 PHD_FILE: MSMg01no078_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTGACCNNNNNNCNCCCCCCCNCCCNNCNNNNNNNNNNCNNNNNNNN
NNNNNNNNNCCNNCCCNNCCCNCNNNNNCNCCCCCNNNNNNNNNTTCTAA
TAAATTGCGGNCCGNCTAAATACNAACTTCACNTATATTTTCCCAAAAAA
AATCCCGCGNAAATTCCACTTTATACCCCATTATGCTACTANAACTAGAA
CCTAAATTTAAAAGTACCCCTCCNACAAANATGCATACCGCCTAAAGCAG
GGGGACTGCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGG
GGGGGGTGTTTTGGTGGTTGTTTCCCCCACAAACCAAAAAAAAAACATGA
ATAAAAAAATGGTTTTTTGGTGTGTCCCCNCCCNCCNNNNCCCCCCCAAA
TTTTTTGTTCTAAAAAAAAAACCCCACCTTTTTTTTTTTTAAGAACTAAC
CNCCCCCCCATTTTTTTTTTTTTTAACAAGGGGGGGAACCTAAAAACAAC
CNCCCCAANACTTTTTTTTTTTTGGTTCTCTTNNNCNNCCCNCCTTCTTC
TCATGTTTTTTTTG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGAAGTCGCAGAGAGATCCTAGTTTTACC
CAGACTTGGTGCTCTTTGGCTGAACCTTGAGGGTCACAGGACCCAGGTCA
CAGGACGTGTCCCTTTCTCTTTAGCAGCAGGTGGATGGAGGAAAAACTCG
GAGACGTAGCTTTTTGTGACAATATGTGCCCATGGCTATACCCAGAAACA
ACTCAGGAAATATATTTTCTCTCCTGGCTACCTAGATGAAGTGTCTTTTC
CCAATTGCAAAATGAAAAATCAAATGTTTCAGAGAAGGCGTTGCTTAGTA
AGTTGACAAAGATGTTCAGGAGCGTTATAAGGGAGTCTGAAATCTGGTGC
TCTCGAAAATTTGCCTGAACGTTGAAGAAAGATACAGGTTGAATTATGTC
CCCAGTGGATGACAAATATTGTTATCCATGCTTCTCTTCATACACAGGAG
TCTTATTTAAGGGCATGGCACATTAGGGATGCACTCCAGAGGGCAGCGAA
CAACCTCTCCTCGCAGGAACACAGTGTTGCTTTGGGTTATGGGGAGGGGA
TTGGCTGCCTTTCTTCCATTACATCCCTTACTCACCCACTCTATCTTTGC
ATTCCCCCCCCTTCCTCTTCCATCCCTTCTCCCCTTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_p21.g1 MSMg01no078_p21.g1 CHROMAT_FILE:
MSMg01no078_p21.g1 PHD_FILE: MSMg01no078_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:29 2005
         (445 letters)



>mm_chr4_109920178_109921022
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggacgtgtccctttctctttagcagcaggtggatggaggaaaaactcggagacgta 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaggacatgtccctttctctttagcagcaggtggatggaggaaaaactcggagacgta 260

                                                                       
Query: 61  gctttttgtgacaatatgtgcccatggctatacccagaaacaactcaggaaatatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttttgtgacaatatgtgcccatggctatacccagaaacaactcaggaaatatatttt 320

                                                                       
Query: 121 ctctcctggctacctagatgaagtgtcttttcccaattgcaaaatgaaaaatcaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcctggctacctagatgaagtgtcttttcccaattgcaaaatgaaaaatcaaatgtt 380

                                                                       
Query: 181 tcagagaaggcgttgcttagtaagttgacaaagatgttcaggagcgttataagggagtct 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcagagaaggcgttgcttagtaagttgacaaagatgtccaggagcgttataagggagtct 440

                                                                       
Query: 241 gaaatctggtgctctcgaaaatttgcctgaacgttgaagaaagatacaggttgaattatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatctggtgctctcgaaaatttgcctgaacgttgaagaaagatacaggttgaattatg 500

                                                                       
Query: 301 tccccagtggatgacaaatattgttatccatgcttctcttcatacacaggagtcttattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccccagtggatgacaaatattgttatccatgcttctcttcatacacaggagtcttattt 560

                                                                       
Query: 361 aagggcatggcacattagggatgcactccagagggcagcgaacaacctctcctcgcagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggcatggcacattagggatgcactccagagggcagcgaacaacctctcctcgcagga 620

                                    
Query: 421 acacagtgttgctttgggttatggg 445
           |||||||||||||||||||||||||
Sbjct: 621 acacagtgttgctttgggttatggg 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)