BAC Information

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BAC

Clone NameMSMg01-079C06
Chromosome4 (Build37)
Map Location 111,130,050 - 111,130,697
singlet/doubletsinglet
Overlap gene2310026E23Rik
Upstream geneLOC100040381
Downstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079C06.T7 (MSMg01no079_c06.b1)MSMg01-079C06.TJ (MSMg01no079_c06.g1)
ACCAG300299AG300300
length691698
length of high quality
(start - end)
652 (40 - 691)624 (75 - 698)
definitionCHROMAT_FILE: MSMg01no079_c06.b1 PHD_FILE: MSMg01no079_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:41 2005CHROMAT_FILE: MSMg01no079_c06.g1 PHD_FILE: MSMg01no079_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CATCAGCTTCATTTCCTGGGATAGCAGCTCTGAATGGCCCCTCAGGTTGA
TTAAAAGGCTTTTGTTAGACTCTAACTTATTAATCACCTGCAGTTGCTGG
GAATGTGTCCCTCTGCGAGGGAGCATTTGAGATTATTGCTTAATTAACAA
GGTTTATAACAGCGCTAATGTGTCCCATTAAAAAAAGTTATAAAAATTAA
CCAGAACGCCAATGCCGTGGCTCATTTAGAAAGCCTGGATACTCTGCAAA
AGGTCATTCGCCCTTAGTAAGATTTAACTGTCACTTTGGAGCTTGTCATC
AGAGCAAGGCCAGCTCTGTCCTCTAGCTTTCATCCTTGCAAGGCAGCATC
AGGGCTTTCCAATGGTTCTGCTATCTGGTAGGGGACAATTTTAACATCAA
AGAGAACACCCACTCAGTGCTGTGAGTCTGAAGACTTCTGCCACTTTAAT
ATGCCCAATGTGACAGAGGATGCTCACATCACACAAAATAAATACAAACA
ATCCCGGTCCTGCCAAACAGCTTGCCGTGTGGACCCAGCCAAATACAAGC
TGGAATCATTCTAATCATTAGGCTAAAAATGGTGACTGTGGGCTGGTATG
GCACAGGCACTTTAAGCCTGCCTGGCTGCAGTGAAAAAGTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAGATATGGAATCAGCCAAAG
TTTCCATCAACATATAAATGAATAATAAAAATTGTCATATATACAATATA
GAATGCTATTCAGCCTTTAAGATTGATGTTTGTCTGGCAACCTACAGATT
GAGAAAAGATCTTTACCAACCCTACATCTGATAGAGGGCTAATATCCAAT
ATATAAAGAACTCAAGAAGTTAGATTCCAGAAAACCAAATAGCCCAATTA
TAAAAATGGGATACAGCCGGGCGTGGTGGCACAGGCCTTTAATCCCAGCA
CTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAAGCCAGCCTGGTCT
ATAAAGTGAGTTTCAGGACAGCCAGGGCTATACAGATAAACCCTGTCTCG
AAGGAAAAAAAAATACAATAAAAATGGGATACAAAGCTAAACAAAGAATT
CTCAACTGAGGACTCTCACATGGCCGAGAAGCACCTAAGGAAATGTTCAA
TATCCTTAGTCATCTGGGAAATGCAAATCAAAATGACACTGAGAGTCCAC
ACCTTACACCAATCAGAATTACTAAGATCAAAAACTCAGGAGACAGCAGA
TTGTGGTGAGAATGTAGAGAAAGAAGAGCACTCCTCCATTGCTGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_c06.b1 MSMg01no079_c06.b1 CHROMAT_FILE:
MSMg01no079_c06.b1 PHD_FILE: MSMg01no079_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:41 2005
         (652 letters)



>mm_chr4_111129845_111130897
          Length = 1053

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%), Gaps = 1/648 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcc-atcagcttcatttcctgggatagcagctctgaatggcccctcaggttgatta 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattccaatcagcttcatttcctgggatagcagctctgaatggcccctcaggttgatta 794

                                                                       
Query: 65  aaaggcttttgttagactctaacttattaatcacctgcagttgctgggaatgtgtccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaaggcttttgttagactctaacttattaatcacctgcagttgctgggaatgtgtccctc 734

                                                                       
Query: 125 tgcgagggagcatttgagattattgcttaattaacaaggtttataacagcgctaatgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgcgagggagcatttgagattattgcttaattaacaaggtttataacagcgctaatgtgt 674

                                                                       
Query: 185 cccattaaaaaaagttataaaaattaaccagaacgccaatgccgtggctcatttagaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cccattaaaaaaagttataaaaattaaccagaacgccaatgccgtggctcatttagaaag 614

                                                                       
Query: 245 cctggatactctgcaaaaggtcattcgcccttagtaagatttaactgtcactttggagct 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 cctggatactctgcaaaaggtcattcgcccttaataagatttaactgtcactttggagct 554

                                                                       
Query: 305 tgtcatcagagcaaggccagctctgtcctctagctttcatccttgcaaggcagcatcagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtcatcagagcaaggccagctctgtcctctagctttcatccttgcaaggcagcatcagg 494

                                                                       
Query: 365 gctttccaatggttctgctatctggtaggggacaattttaacatcaaagagaacacccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctttccaatggttctgctatctggtaggggacaattttaacatcaaagagaacacccac 434

                                                                       
Query: 425 tcagtgctgtgagtctgaagacttctgccactttaatatgcccaatgtgacagaggatgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcagtgctgtgagtctgaagacttctgccactttaatatgcccaatgtgacagaggatgc 374

                                                                       
Query: 485 tcacatcacacaaaataaatacaaacaatcccggtcctgccaaacagcttgccgtgtgga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcacatcacacaaaataaatacaaacaatcccggtcctgccaaacagcttgccgtgtgga 314

                                                                       
Query: 545 cccagccaaatacaagctggaatcattctaatcattaggctaaaaatggtgactgtgggc 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cccagccaaatacaagctagaatcattctaatcattaggctaaaaatggtgactgtgggc 254

                                                           
Query: 605 tggtatggcacaggcactttaagcctgcctggctgcagtgaaaaagta 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggtatggcacaggcactttaagcctgcctggctgcagtgaaaaagta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)