Query= MSMg01no079_d05.b1 MSMg01no079_d05.b1 CHROMAT_FILE:
MSMg01no079_d05.b1 PHD_FILE: MSMg01no079_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:45 2005
(279 letters)
>mm_chr4_128865652_128866330
Length = 679
Score = 487 bits (252), Expect = e-142
Identities = 269/276 (97%), Gaps = 4/276 (1%)
Strand = Plus / Plus
Query: 5 gaattcccacacaggccccggcagcagatttttctaaactgaagcaacaggtttctttta 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccacacaggcccaggcagcagatttttctaaactgaagcaacaggtttctttta 264
Query: 65 caagaatagtctattaaagcctggggctcttaacaaccacggggggg--ggggggggacg 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 265 caagaatagtctattaaagcctggggctcttaacaaccacgggggggtgggggggggagg 324
Query: 123 acacaaaaaacaaaaaatgagggcagccggtgaactccgtcctcatttggtggccctctg 182
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aca--aaaaacaaaaaatgagggcagccggtgaactccgtcctcatttggtggccctctg 382
Query: 183 aagaagggctcaccttaggtgtctgcagcattccctgcggccctggatgaaacccagcaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagaagggctcaccttaggtgtctgcagcattccctgcggccctggatgaaacccagcaa 442
Query: 243 cagtggcccagggataccttgcgaggatgcccgcgg 278
| ||||||||||||||||||||||||||||||||||
Sbjct: 443 cggtggcccagggataccttgcgaggatgcccgcgg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no079_d05.g1 MSMg01no079_d05.g1 CHROMAT_FILE:
MSMg01no079_d05.g1 PHD_FILE: MSMg01no079_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:46 2005
(425 letters)
>mm_chr4_129010482_129011306
Length = 825
Score = 754 bits (390), Expect = 0.0
Identities = 398/402 (99%), Gaps = 3/402 (0%)
Strand = Plus / Minus
Query: 1 tttggaaactcaagagttaagatacgtgcagaattcaattatgaggctgatggggttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttggaaactcaagagttaagatacgtgcagaattcaattatgaggctgatggggttcag 343
Query: 61 caggtaatagaaatttggagtaaagcgttgttttggtttgagggctaggaattgaacctt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 342 caggtaatagaaatttggagtaaagagttgttttggtttgagggctaggaattgaacctt 283
Query: 121 gtgcatggtaaggaaggcagtaccatctgcaatacatctctactgtcatggaaagttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtgcatggtaaggaaggcagtaccatctgcaatacatctctactgtcatggaaagttcat 223
Query: 181 gtgcattttactagtaactt---aatgaggctgctgggctggagaggtggctcagcggtt 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtgcattttactagtaacttaagaatgaggctgctgggctggagaggtggctcagcggtt 163
Query: 238 aagagcactggctgatcttccaaaggtcctgagttcaaatcccagcaaccacatggtggc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aagagcactggctgatcttccaaaggtcctgagttcaaatcccagcaaccacatggtggc 103
Query: 298 tcacaaccatctgtaatgagatctgacaccctctctggtctgtctgaagacagctacagt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tcacaaccatctgtaatgagatctgacaccctctctggtctgtctgaagacagctacagt 43
Query: 358 gtacttaagatttaataacaaataactcttaaaaaaaaaaaa 399
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gtacttaagatttaataacaaataactcttaaaaaaaaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
