BAC Information

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BAC

Clone NameMSMg01-079D06
Chromosome4 (Build37)
Map Location 16,064,619 - 16,065,045
singlet/doubletsinglet
Overlap geneRipk2
Upstream geneEfcbp1, Tmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
Downstream geneLOC667150, LOC383994, LOC100040154, LOC667212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079D06.T7 (MSMg01no079_d06.b1)MSMg01-079D06.TJ (MSMg01no079_d06.g1)
ACCAG300342AG300343
length712714
length of high quality
(start - end)
319 (38 - 356)428 (69 - 496)
definitionCHROMAT_FILE: MSMg01no079_d06.b1 PHD_FILE: MSMg01no079_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005CHROMAT_FILE: MSMg01no079_d06.g1 PHD_FILE: MSMg01no079_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCT
CAACTCTGTGTCTGTGTGTGTGTGTGTGTACATATTGTGTATATGTGCCT
GTGTTGTGTGTGTGCACATATTGTGTATATGTGCCTGTGTTGTGTGTGTA
TATACTATACATATGTGCATGTGTTGTGTGCATGTGTACATGTGTTGTGT
TTATTTGTGTATGTGTTGTACGGATATGTACACGTGTAGATCATGAATCA
GGAAGAAACATGTTTAATCTGAGCTACGCCATCTTCTGGAAGCCTATATA
AGGACATGGAAGAAGGAAGCATTTGCCCTTTGCCTGCTTGCCCCCGCCTT
TGTTAGCAAGGACATTCCTTCCTGTAGTGGCATTACAGCTCACTTCAAGA
TTCCAGCATTGACTACCGACCATCCAACTTTGTGGGCTGAGCAACTTTTG
GATTCTTGGACTTTCTGTTCACAGCCAATGTTGCATTTACTTGTACTGCA
GTCTGTATGTTATTCCAATAAATCCCCTTCATGTATGCTTAACATTATAT
ATATATATATACACATATACTATATACATATATACTCATTCTATTATTTC
TGCTTCTCTCCTCATTCTGTCCATTGCTCTATTCCTGTTATATCTTCCCG
GTCGTACTCAGACAGGAATGACATTACACACCTTACCCGATAACTTTTTT
TCCTGACCCTGT
GATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAACAAAAAAGCGAAGTTGTTTGGTAGTAAT
AACATTCCGTTCCCTTAGTGAACACCTGCCTTGTGCGCCCTCCTCACTGG
GATGAGCAGAGAGAGCTAAGAAGTAAATGTGGCATCTTCTCAATGTAACC
TTCTTCTGGAGAAAGCATGGAGGGAATGAGTAAATAACTAAGACACAACT
TGTCAAGTCAGTCCTGGACTAAAACAAATGGCCTCACCCACAAGAAGAAT
GGCAAAGGGTTTTTAGGAGCTTGTATTTGGGTTCTTGTTTCAAGCTTGAA
ACAGAGCCAGTCATTCTCGGACTAAGTAGTCCAGCAAAGAAAACATCCAA
AGTAAAGAGTCTGAGACGATAGGAAGAAAATGCTTTGTGTTTTCAAGGAA
AAAAGAGGAAGCCCCTGTATTTAGAGCATAGTGAACCAAGAAGGTGGTGC
AGGTGCCTTATAGAGTAAGGGAATGGCTGCCAGCCCCTCTCAGACCTATA
CTCATGCGTAATGGAAAGCCATTCACTCCTGTCTCCTCTGGTAGTAATGT
GATCTAATTTAAGTTTAGGTCAAAATCCCTCTTGACTGCTGGATTGCGAA
ACGACTGTGTGATAATAGAAAGAGCACCTTCGTACTTCCCTCAACAACTG
CTCCATTTTATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_d06.g1 MSMg01no079_d06.g1 CHROMAT_FILE:
MSMg01no079_d06.g1 PHD_FILE: MSMg01no079_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:46 2005
         (428 letters)



>mm_chr4_16064540_16065366
          Length = 827

 Score =  735 bits (380), Expect = 0.0
 Identities = 416/428 (97%), Gaps = 1/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaacaaaaaagcgaagttgtttggtagtaataacattccgttcccttagtgaacacctg 60
           |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 506 ctaacagaaaagcgaagttgtttggtggtagtaacattccgttcccttagtgaacacctg 447

                                                                       
Query: 61  ccttgtgcgccctcctcactgggatgagcagagagagctaagaagtaaatgtggcatctt 120
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 446 ccttgtgagccctcctcactgggatgagcagagagagctaagaa-taaatgtggcatctt 388

                                                                       
Query: 121 ctcaatgtaaccttcttctggagaaagcatggagggaatgagtaaataactaagacacaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 ctcaatgtaaccttcttctggagaaagcatggagggaatgaataaataactaagacacaa 328

                                                                       
Query: 181 cttgtcaagtcagtcctggactaaaacaaatggcctcacccacaagaagaatggcaaagg 240
           |||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||
Sbjct: 327 cttgtcaagtcagtcctgaattaaaacaaatggcctcacccatgagaagaatggcaaagg 268

                                                                       
Query: 241 gtttttaggagcttgtatttgggttcttgtttcaagcttgaaacagagccagtcattctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtttttaggagcttgtatttgggttcttgtttcaagcttgaaacagagccagtcattctc 208

                                                                       
Query: 301 ggactaagtagtccagcaaagaaaacatccaaagtaaagagtctgagacgataggaagaa 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggactaaatagtccagcaaagaaaacatccaaagtaaagagtctgagacgataggaagaa 148

                                                                       
Query: 361 aatgctttgtgttttcaaggaaaaaagaggaagcccctgtatttagagcatagtgaacca 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aatgttttgtgttttcaaggaaaaaagaggaagcccctgtatttagagcatagtgaacca 88

                   
Query: 421 agaaggtg 428
           ||||||||
Sbjct: 87  agaaggtg 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space:   342742
Effective search space used:   342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)