BAC Information

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BAC

Clone NameMSMg01-079I20
Chromosome4 (Build37)
Map Location 122,489,342 - 122,489,833
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
Downstream genePpt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I20.T7 (MSMg01no079_i20.b1)MSMg01-079I20.TJ (MSMg01no079_i20.g1)
ACCAG300605AG300606
length715720
length of high quality
(start - end)
533 (37 - 569)406 (65 - 470)
definitionCHROMAT_FILE: MSMg01no079_i20.b1 PHD_FILE: MSMg01no079_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:12 2005CHROMAT_FILE: MSMg01no079_i20.g1 PHD_FILE: MSMg01no079_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
TTTACCACTGAGGGACTCTGATATGATTGATAGCTTGTATAATCCCAATG
ATAGGACAATGGAGACAGAAATATCCCTGTGGTTGACTGGCCAGCCACCT
TAGCTTAATTGGTGAGCTCCAGTTCTCTAGAGAGACCTTGTCTCAAAAAA
TATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAAAGATGATGGCAGGTGGCTCCTAAGCAATGACATCTGAGGTT
GACCTCTGTTCTTCACAAACATGGATACCTGCACACATACAAATGCATAC
ATATATGCACTTATACACATACACTACAAGAAGTATAGATACTGAAAAGA
TTCTGGAATGTTATCATCTGGAGGTACCACAATATGGTGGACAAAAAAAG
GTCATGCTGTGGGAGACCTGTGTGACCTTTCACGTGTCTTCCCTGTGTGG
TACTCAATTTTCTTTCTTTCTCCATTTTCAGCTGGGTTGGACTGGGTTTT
TTATTGAGACAAGGATTCTCTGTGTAGCCCTGGCTGTCCTGGTATTTGCT
CTATTAATCACAAAGATCTGCTTGTATTGAAAGCAAAGTCTAGAGCCTGA
ATGAAGAAGTATCTGATGTCATTGGCCCAGTTTACACACCAGAATGACAG
GACTCCCTTGTTGGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGATAAACCAGGCTGAATCATGGAGATTCTTCTG
CCGCTGCTTCCCAAGTTCTGGGGTTAAAACTTGGTGCCCTCCCTGATACC
TGCCTCAGATTTTTGTTCCCTCCAAGACAGAGTTTCTCTTTGTGGCCCTG
GCTGTCCTTGGTTTGTAGACGAGTCTGTCTATACCAGCTCAGATCTTTTT
TTTTTAGATTCTCTATTATTAAGAATTGATGGGGCTGGAGGGATGGCACA
GCGGCTGATATCACTGTCTGCTCTTCTAGAGATCCTGAGTTCAGTTCTCA
CCAACCACATGGCGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCT
TCCGGTGTGGCTGAAGAGAGTGACTGTGTACTCATATAAATAAAACAGAT
AATTTTTTTTTTTTGAGACAGGGTTTCTCTGTGCAGCCAGCCTGACCCCT
ATTTCTTATCTTTTTTTTCCTCCTCCTCCTTTCTGTTTTTTTTTACTCCT
TTTTTTCCCTTCCCCTCTCCTTCTTATTTTTTTTTTTATCTCCCTACATT
ACCTTTTTTCTCTTCTTTTCTTTCGCCTCCTCTTCCTCCCTTTTTTTTTC
CTTTCCCCCTTTTTTCCCCCCGCCCTTTTTTTTTCTCCCCCTTCATTTTC
CCCCTTTTTTTCCCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i20.b1 MSMg01no079_i20.b1 CHROMAT_FILE:
MSMg01no079_i20.b1 PHD_FILE: MSMg01no079_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:12 2005
         (533 letters)



>mm_chr4_122489105_122490033
          Length = 929

 Score =  826 bits (427), Expect = 0.0
 Identities = 486/529 (91%), Gaps = 37/529 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtatttaccactgagggactctgatatgattgatagcttgtataatcccaatg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaattctgtatttacaactgagggactctgatatgattgatagcttgtataatcccaatg 297

                                                                       
Query: 65  ataggacaatggagacagaaatatccctgtggttgactggccagccaccttagcttaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataggacaatggagacagaaatatccctgtggttgactggccagccaccttagcttaatt 357

                                                                       
Query: 125 ggtgagctccagttctctagagagaccttgtctcaaaaaatataataataataataataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggtgagctccagttctctagagagaccttgtctcaaaaaatataataataataataataa 417

                                                                       
Query: 185 taataataataataataataataataataataataataaagatgatggcaggtggctcct 244
           ||||||                                 |||||||||||||||||||||
Sbjct: 418 taataa---------------------------------agatgatggcaggtggctcct 444

                                                                       
Query: 245 aagcaatgacatctgaggttgacctctgttcttcacaaacatggatacctgcacacatac 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcaatgacatctgaggttaacctctgttcttcacaaacatggatacctgcacacatac 504

                                                                       
Query: 305 aaatgcatacatatatgcacttatacacatacactacaagaagtatagatactgaaaaga 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 aaatgcatacatatatgcacttatacacatatactacaagaagtatagatactgaaaaga 564

                                                                       
Query: 365 ttctggaatgttatcatctggaggtaccacaatatggtggacaaaaaaaggtcatgctgt 424
           |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 565 ttctggaatgctatcatctggaggtaccacaatatggtggacaaagaaaggtcatgctat 624

                                                                       
Query: 425 gggagacctgtgtgacctttcacgtgtcttccctgtgtggtactcaattttctttctttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 625 gggagacctgtgtgacctttcacgtgtcttccctgtgtggtactcaattttctttctt-- 682

                                                            
Query: 485 tccattttcagctgggttggactgggttttttattgagacaaggattct 533
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 --cattttcagctgggttggactgggttttttattgagacaaggattct 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 929
Length adjustment: 10
Effective length of query: 523
Effective length of database: 919
Effective search space:   480637
Effective search space used:   480637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)