Query= MSMg01no079_j17.b1 MSMg01no079_j17.b1 CHROMAT_FILE:
MSMg01no079_j17.b1 PHD_FILE: MSMg01no079_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:17 2005
(531 letters)
>mm_chr4_107415615_107416546
Length = 932
Score = 951 bits (492), Expect = 0.0
Identities = 519/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgagaga-ccctgcacataccacactggtggtatgggttagtaacatgatgg 63
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctctgagagagccctgcacacaccacactggtggtatgggttagtaacatgatgg 505
Query: 64 tagagctcactgaagaactagctggttcttttgggcaggaaatgggctctggacttgcag 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggagctcactgaagaactagctggttcttttgggcaggaaatgggctctggacttgcag 445
Query: 124 ggttaatgaggttgtggcaacagcagagaccttcagaatggaacgttagcctttgcaagg 183
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggttaatgtggttgtggaaacagcagagaccttcagaatggaacgttagcctttgcaagg 385
Query: 184 ctctggcttgacaagttcctggaccactcaggggttagtcatgttcaggactggcttgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctggcttgacaagttcctggaccactcaggggttagtcatgttcaggactggcttgtt 325
Query: 244 cagcctgtcccagccaccttggtcccttggttttcctatgaaaaaagaaggctggataag 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagcctgccccagccaccttggtcccttggttttcctatgaaaaaagaaggctggataag 265
Query: 304 catctgttagactaacaaatcagagaagagttgacacctgcaagaagcggttgcagatag 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catctgttagaccaacaaatcagagaagagttgacacctgcaagaagcggttgcagatag 205
Query: 364 agtcccagcgatgtcaccagctcggtgtgtgagaccttgaacataatgaactcgtttctc 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 agtcccagcgatgtcaccagctcgctgtgtgagaccttgaacataatgaactcgtttctc 145
Query: 424 tgagccatgatctctcagtctgctcctcatgaagtttttgtgaggattaagcacttagca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 144 tgagccatgatctctcagtctgctcctcatgaagtttttgtgaggattaagcatttagca 85
Query: 484 ctgggttttaataaacagcaattagtattactccacggctcagattca 531
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctgggttttaataaacagcaattagtattactccacggctcagattca 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_j17.g1 MSMg01no079_j17.g1 CHROMAT_FILE:
MSMg01no079_j17.g1 PHD_FILE: MSMg01no079_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:17 2005
(451 letters)
>mm_chr4_107251172_107252022
Length = 851
Score = 864 bits (447), Expect = 0.0
Identities = 450/451 (99%)
Strand = Plus / Plus
Query: 1 ttcagagactcatagttacatccccaatgtcctgacttgacctgctggaggaaagagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagactcatagttacatccccaatgtcctgacttgacctgctggaggaaagagtga 260
Query: 61 accatagtggggggagcaggcagggtcctcctggaccccaaccctagttctcttccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatagtggggggagcaggcagggtcctcctggaccccaaccctagttctcttccagcc 320
Query: 121 atgctggcctcttggctgcttctcaaacatgctgagctcattagaaccacatgctttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctggcctcttggctgcttctcaaacatgctgagctcattagaaccacatgctttctg 380
Query: 181 catagctattccttctgcccaaatgcccctaccccagtctgacctttatgcattcaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagctattccttctgcccaaatgcccctaccccagtctgacctttatgcattcaaacc 440
Query: 241 ccagctcctatgttccctcctccaggaggccttccctgacctgtagcccactctctggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagctcctatgttccctcctccaggaggccttccctgacctgtagcccactctctggta 500
Query: 301 tctgtatgagttcctacttcgcagccattaagctccggggaagttcaagactttttaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtatgagttcctacttcgcagccattaagctccggggaagttcaagactttttaaga 560
Query: 361 tttttgtttcttgctgtgttttcagagttagcaccagttcccagcccattgtaatgtgac 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttgtttcttgctgtgttttcagtgttagcaccagttcccagcccattgtaatgtgac 620
Query: 421 ccacaggtcacaacgaatgtcaccaaattag 451
|||||||||||||||||||||||||||||||
Sbjct: 621 ccacaggtcacaacgaatgtcaccaaattag 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
