Query= MSMg01no080_d24.b1 MSMg01no080_d24.b1 CHROMAT_FILE:
MSMg01no080_d24.b1 PHD_FILE: MSMg01no080_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:05 2005
(367 letters)
>mm_chr4_48722187_48722953
Length = 767
Score = 636 bits (329), Expect = 0.0
Identities = 356/365 (97%)
Strand = Plus / Minus
Query: 3 ggaattcttccatttttgcccgcaatcttcaattaaagcgtgatttctttatatactgtc 62
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggaattcttccatttttgcgggcaatcttcaattaaagcgtgatttctttatatactgtc 508
Query: 63 ataaatgtgatggagatgcctgtgagcgtagcaatattaatttggatctgatcatttgtc 122
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 507 ataaatgtgatggagatgcctgtgagcgcagcaatattaatttggatctgatcatttgtc 448
Query: 123 ttttccaggatcttatcaatgtgaggagatattatcaaagaccctcaggccttcagaacc 182
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 447 ttttccaggatcttatcaatgtgaggagatattatcaaaggcccccaggccttcagaacc 388
Query: 183 tagcgttattaaaaatcaatactgccgctatgaatggcacttgggaatgcttccgagaag 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 tagcgttattaaaaatcaatactgccgctatgagtggcacttgggaatgcttccgagaag 328
Query: 243 aaaaccacatctgtagtttcataaatggatttcaaatattgagcaaactaatttgttcag 302
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 aaaaccacatctgtagtttcataaatggatttcaaataaagagcaaactaatttgttcag 268
Query: 303 tgcaacaggaagcttttcagggcaggacagtaaaatgcagactccccttacatcctttct 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtaacaggaagcttttcagggcaggacagtaaaatgcagactccccttacatcctttct 208
Query: 363 cactt 367
|||||
Sbjct: 207 cactt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d24.g1 MSMg01no080_d24.g1 CHROMAT_FILE:
MSMg01no080_d24.g1 PHD_FILE: MSMg01no080_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:05 2005
(259 letters)
>mm_chr4_48567368_48568027
Length = 660
Score = 422 bits (218), Expect = e-122
Identities = 254/276 (92%), Gaps = 17/276 (6%)
Strand = Plus / Plus
Query: 1 tggggattgaactctggtgtcaggcttggtgacaaatagctttatctcaccagccctcgt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 201 tggggattgaactctggtgtcaggcttggtgataaatagctttatctcactagccctcat 260
Query: 61 agggttcattttgggaacaaaatacctttttttcccccacacttttaaaatctgaggttg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggttcattttgggaacaaaacacctttttttcccccacacttttaaaatctgaggttg 320
Query: 121 gatattgagattt-acttctttcctttggaaaaaaatgcaattcatttactcagaaattt 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattgagattttacttctttcctttggaaaaaaatgcaattcatttactcagaaattt 380
Query: 180 tgagcaagaaggaaataaaatatggatcttctttttttcctctctctctctctctct--- 236
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcaagaaggatataaaatatggatcttctttttttcctctctctctctctctctctc 440
Query: 237 -------------ttttgtttgtttgttttgttttg 259
|||||||||||||||||||||||
Sbjct: 441 tctctctctgattttttgtttgtttgttttgttttg 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 660
Length adjustment: 9
Effective length of query: 250
Effective length of database: 651
Effective search space: 162750
Effective search space used: 162750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
