BAC Information

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BAC

Clone NameMSMg01-080E02
Chromosome4 (Build37)
Map Location 118,284,469 - 118,284,927
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik
Downstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080E02.T7 (MSMg01no080_e02.b1)MSMg01-080E02.TJ (MSMg01no080_e02.g1)
ACCAG301142AG301143
length679687
length of high quality
(start - end)
459 (64 - 522)495 (73 - 567)
definitionCHROMAT_FILE: MSMg01no080_e02.b1 PHD_FILE: MSMg01no080_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:06 2005CHROMAT_FILE: MSMg01no080_e02.g1 PHD_FILE: MSMg01no080_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATATTTGCGGCGCTAACGACTCCTATTCAAGAGGACCGCGGATTCCTT
AGGTGCCCTTACCAAGCCACAAAATAAGGAAACCGGTATGGGGAGGGGAT
TGTGGGTAAACAGAAGTCATGGAGAAGAAAGAATCCACAGGGTGTCAGTC
AGCAGGGAGCTTGTTGGGCTCTGAGCTCAGAGAGAAGGGAAATGGAATTC
TCGTTCCACCACAGAGTGCTGATCTTGGACAGGTGACTTAACTCTTTTGA
GCCTTGGTTCCCCTGGTCTGTAAAGCTGGCATGATACTGATATGCTCTGT
GAAGGATAGGACTCAGATGGGTATGTCAGCAGGATCTGACACGTCTCGCA
GGACATTTCGCTGTGTGAGCTGTGACCACCTCTGTGACCGTGTGGATGAA
GTCAAGAACTCCTCCCTGAATCTCCTCCCCACCCCCTTACCACACAGCCT
TCTGTCGGGTCTACTGAGTCCATTTTCCTGCCCCTCTTTGTTCATTGTTG
CCCCTGTGGAACTGCCCCTGTCAGAGGGCACGTGCTCCTAGCCCATCAAG
GTGGCAAGGCTCTCGCACACTGTAAGGCCCCCGAAGGCCCTTATTTCTTG
AAACTGTCAAATTACGCACACCGTCCTTTTATGGCCTGCTTTTTGAAATG
ATAATCTACCATTTTGAACACCGTCTTAT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTACCTCTGGAAGAGCAGTCACTGCTC
CTAACTGCTGAGCTATCTCTCCAGCCCCTGACAAATTATTTTAATTAAAA
AAAAAGACTGCATTGAAGAGGGAAAATTTAGAAGTAAGGGTCACATGGAG
ATGGATACAGGAATAACAGAAGAGAGGATGGATGGTCTCCTGACCTGGGT
GAAAGAAAGGACAACTGTGTGTATGATGAGCAGGGACTGGTCAGGAGAGG
GGACGGGGACAGGGAAAGTGAAGACTGGGGATGGCTTCAAGTCTCTTTCA
TGTTTCTACTCCCATCAAAAGCATCTCCTGCCCTAAGCACTGTCTTGCTC
ATCAGCATATGAGTGGAGCCCTACTTAAGACTATTAAGAATAGTGTTTGA
AAATTTCCTTTACATGCCTTTCCTTGATCATATGCTTGTATATGTCTATG
TGCTTACATATTGTTTCAGAATTATACTTAATATTTGTATTGTTGGACAA
TGCATTGAGTGTGTTCAACCTTAGGGAGCACAGCCAAGCACCATTAAAGG
GATCACTTTAATTTTCTCCCCTGTTGGATCTAGTTACCCCTGTTAATACT
AGACACGTGCTACTGCAGCCAGGCTGGCAGGTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_e02.b1 MSMg01no080_e02.b1 CHROMAT_FILE:
MSMg01no080_e02.b1 PHD_FILE: MSMg01no080_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:06 2005
         (459 letters)



>mm_chr4_118284269_118285127
          Length = 859

 Score =  857 bits (443), Expect = 0.0
 Identities = 455/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccacaaaataaggaaaccggtatggggaggggattgtgggtaaacagaagtcatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccacaaaataaggaaaccggtatggggaggggattgtgggtaaacagaagtcatgga 260

                                                                       
Query: 61  gaagaaagaatccacagggtgtcagtcagcagggagcttgttgggctctgagctcagaga 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaaagaatccacagggtgtcaggcagcagggagcttgttgggctctgagctcagaga 320

                                                                       
Query: 121 gaagggaaatggaattctcgttccaccacagagtgctgatcttggacaggtgacttaact 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggaaatggaattctcattccaccacagagtgctgatcttggacaggtgacttaact 380

                                                                       
Query: 181 cttttgagccttggttcccctggtctgtaaagctggcatgatactgatatgctctgtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgagccttggttcccctggtctgtaaagctggcatgatactgatatgctctgtgaa 440

                                                                       
Query: 241 ggataggactcagatgggtatgtcagcaggatctgacacgtctcgcaggacatttcgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ggataggactcagatgggtatgtcagcaggatctgacacgtctcgcaggacattttgctg 500

                                                                       
Query: 301 tgtgagctgtgaccacctctgtgaccgtgtggatgaagtcaagaactcctccctgaatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgagctgtgaccacctctgtgaccgtgtggatgaagtcaagaactcctccctgaatct 560

                                                                       
Query: 361 cctccccacccccttaccacacagccttctgtcgggtctactgagtccattttcctgccc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cctccccacccccttaccacacagccttctgtcgggtctactgagtccattttcttgccc 620

                                                  
Query: 421 ctctttgttcattgttgcccctgtggaactgcccctgtc 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctttgttcattgttgcccctgtggaactgcccctgtc 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)