BAC Information

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BAC

Clone NameMSMg01-080J14
Chromosome4 (Build37)
Map Location 108,595,489 - 108,595,820
singlet/doubletsinglet
Overlap geneRab3b
Upstream geneCpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12
Downstream geneNrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J14.T7 (MSMg01no080_j14.b1)MSMg01-080J14.TJ (MSMg01no080_j14.g1)
ACCAG301397AG301398
length699700
length of high quality
(start - end)
270 (47 - 316)352 (86 - 437)
definitionCHROMAT_FILE: MSMg01no080_j14.b1 PHD_FILE: MSMg01no080_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:33 2005CHROMAT_FILE: MSMg01no080_j14.g1 PHD_FILE: MSMg01no080_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTTGTCCATTTTTCCTTTGATGAGTATAAAGTGTCCTTCCTT
ATCCTTTTTGATAACTTTTGCCTGAAAGTCTATTTTAATAGATATTAGAA
TGTCTACTTCAACTTGTTTCTTGGGACCATTTGCTTATAAAACTGTTTTC
CAGCCTTTTACTCTGAGGTAGTGTCTGTTTTTGACACTGAGGTGCGTTTC
CTGTATGCAGCAAAATGTTGGGTCCTGTTTATGTATCCAGTCTGTAGCCT
ATGCCTTTTTATTGTTGAATTGAGTCCATTGATGTTAAGAGATATTAAGG
AATAATGATTGTTGCTTCCTTTTATTTTTGACGCTATTTTTATGTTTTGC
GCCTATCTTCTCCTGATTTTGAATTAAAAAGAATCCCCCTATTTTTCACC
AAAACGTTAATCCTGACCTCGCATTATGCCTTTTTAAGTACCCGATTTCT
CTGACCATTTTCGAGTGCCAATTTTTTACCTCCTCATACTTTTCTCATAT
CCTTTTTTTCCCACTTACTTCCCCTTTTTCCTACCCTTGTCCCCCTTATT
CCCTTTCCCCTTCCCGTTTTATTTCTTCCCACCCGCTTCCCCCCTTATTT
TTTTTGTCTCTCCCCCTTACCTTTTCTCCTTTCCCCCCCTACCTTTTTA
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAATGTGTGAGCACGAGTATGCTCT
CTTCTCTCTCACTCACGCTTGGCACATGTGTGGAGGTCAGGGATCAACTT
GCATGCGTCCTTTCTTCCTACCATGTGGGTCCAGATAACTGAGCTCAGGT
CATCAGCATCAGTGATGGGTGGCCCTAGCTACTGAGCCATGTCATCAGCC
CTGCTGCTGCACTTCTGATCTCACATGAGCTGAGATTAACTGAGGAAGAT
TTGTGAACGATTGGGTCTGTCAACATCTTCTCAAACGAGGAAGAAGAGCC
CTTAAGCTTTCCCTGACCAGGACCTATGGAGAGATCATTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG
AGCCATTTTCTTATAATTTCCCACCCCCTTCGCTATTTCCCCCCCTTTTC
CTTTTTTTTCCCCGACCCTTGTTCCTCACCCCCCCCCTTTCACCCTCCCT
ATTCCCCTTTCCCTACCCCTTCCTTCCCCTCCTTTCCTCTATTTCCCCCA
TTTTACTCTCCTCCCTTCTTCCCTTCCTCCCCCGCCCATTCCCCCTCCCC
CCCCCCACTTTTTTCCCCCCCTCCTTCCCATTCCCCAATTTTTCCACCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j14.g1 MSMg01no080_j14.g1 CHROMAT_FILE:
MSMg01no080_j14.g1 PHD_FILE: MSMg01no080_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:33 2005
         (352 letters)



>mm_chr4_108595289_108596040
          Length = 752

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacgagtatgctctcttctctctcactcacgcttggcacatgtgtggaggtcagggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacgagtatgctctcttctctctcactcacgcttggcacatgtgtggaggtcagggatc 260

                                                                       
Query: 61  aacttgcatgcgtcctttcttcctaccatgtgggtccagataactgagctcaggtcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttgcatgcgtcctttcttcctaccatgtgggtccagataactgagctcaggtcatca 320

                                                                       
Query: 121 gcatcagtgatgggtggccctagctactgagccatgtcatcagccctgctgctgcacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcagtgatgggtggccctagctactgagccatgtcatcagccctgctgctgcacttc 380

                                                                       
Query: 181 tgatctcacatgagctgagattaactgaggaagatttgtgaacgattgggtctgtcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatctcacatgagctgagattaactgaggaagatttgtgaacgattgggtctgtcaaca 440

                                                                       
Query: 241 tcttctcaaacgaggaagaagagcccttaagctttccctgaccaggacctatggagagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctcaaacgaggaagaagagcccttaagctttccctgaccaggacctatggagagat 500

                                           
Query: 301 cattctctctctctctctctctctctctctct 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 cattctctctctctctctctctctctctctct 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)