AATTTGCGGCGCTNTACGACTCCTATATCGAGAGATCCGCGGATTCTTCC
CTTCCTTAAACTTTATATTTTTTTTCTGCCTTCTCTTTTGCATATTTCCA
AAGCCTTGGAGAGGGGGGAGAAAGGGAAATAGATACAGATGCTCTATTTA
GGGATGAGCCTCAATAGCCATTTTGGCCAGTCATGAGTCTCTACATGGCT
GTCTATTGAAGAAAGAGGCTTATCAGTTTTAACAAAAACAGCAGTAACCT
ATAGGTATAAGTATAAATATTTAAAAGGTAGTTTGGCAACATGTTCATTT
AGAAAAATGATGATAGATTAGCTTGGCCTCTAAGGCTTATGACCAGCTTT
GCAGCATCAGACAAAAATTCTCTTCTGTAGAGTGAGTCTCCAATCCCCTC
AGAAAAGCGTTGGTTATTGCCTGTCCAAATTTGGTTCCTGTTGCCAAGAT
AAAGCACTTTGACCAAAAGCAACTTAGGGGAGAATCGAATTTACTGGATG
TTACCTTCAAACCATAGTTCATCATTGGAGAAAGCTAGAGCAGGAATTCA
AGCAGAAAGTAGAAGCAGAAACCATGAAGGGGTGCTTATTGACTCACTTA
TGGGCTTATGTTCAACCAGCTTTCTTATAATAAGGCCTGTAAAATTCACA
GTGAGCTAGGCCCTCCTACATCAATATACAATTACAGAATTC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTAAAATGAACAGCAATATATAACATCCAGC
TTTTAAAACCATCCTGGAATTAATATATTTATATTCTATACTCAAACATT
ACAAGTTTTGGTTTAAAAATTAGTAACAATATTGTATAAATTAGAGTCCA
AGTTCTAGCTTGATATTTTGTAACATTTCTGGAGATACTTTTTCTGAATA
AATAATCTCAAGTTAATGAGGTAAATTAGTCAAACACTCATCACAGATTA
CAGAACAAAAACTGTTGTTCTCTATGAAAAGTACTATGCTTATTTTCAAT
TCTCCTATATAAATTTAAAACAAATTTGAAATAGCTTTTCAATCATAGAC
TTACCCTTCAACTCGATAACAATCATATTCTATTTTATATTTTATTGTAA
AAATTTTGAAAATAAATGAAAACATCACACACTAAAACTAACCAGACTTT
AGAACCAACTTTAGAACAATTGTGTTCTATGCCCACTTGTTATACTTTAC
CTGAAATTACCCAATCTCTTATAGGTGTCCAGCAGACTTCATCAAATACT
TCTAGTTTATATATTTTGCAATCTAATATATGCTTTTTATCAGTATGTCA
GCATTCTTACTACAAAATCTGATGTGACTCAAAAAATGAAATAAA

Query= MSMg01no080_j23.g1 MSMg01no080_j23.g1 CHROMAT_FILE:
MSMg01no080_j23.g1 PHD_FILE: MSMg01no080_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:35 2005
         (612 letters)



>mm_chr4_4788031_4789042
          Length = 1012

 Score = 1033 bits (534), Expect = 0.0
 Identities = 555/562 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaaatgaacagcaatatataacatccagcttttaaaaccatcctggaattaatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttaaaatgaacagcaatatataacatccagcttttaaaaccatcctggaattaatatat 503

                                                                       
Query: 61  ttatattctatactcaaacattacaagttttggtttaaaaattagtaacaatattgtata 120
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 502 ttatattctatacttaaacattacaagttttggtttaaaaattagtaacaatattgcata 443

                                                                       
Query: 121 aattagagtccaagttctagcttgatattttgtaacatttctggagatactttttctgaa 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 442 aattagaatccaagttctagcttgatattttgtaacatttctggagatacttttactgaa 383

                                                                       
Query: 181 taaataatctcaagttaatgaggtaaattagtcaaacactcatcacagattacagaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taaataatctcaagttaatgaggtaaattagtcaaacactcatcacagattacagaacaa 323

                                                                       
Query: 241 aaactgttgttctctatgaaaagtactatgcttattttcaattctcctatataaatttaa 300
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 322 aaactgttgttctctatgaaaagtactaagtttattttcaattctcctatataaatttaa 263

                                                                       
Query: 301 aacaaatttgaaatagcttttcaatcatagacttacccttcaactcgataacaatcatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacaaatttgaaatagcttttcaatcatagacttacccttcaactcgataacaatcatat 203

                                                                       
Query: 361 tctattttatattttattgtaaaaattttgaaaataaatgaaaacatcacacactaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctattttatattttattgtaaaaattttgaaaataaatgaaaacatcacacactaaaac 143

                                                                       
Query: 421 taaccagactttagaaccaactttagaacaattgtgttctatgcccacttgttatacttt 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 142 taaccagactttagaaccaactttagaacaattgtgttctgtgcccacttgttatacttt 83

                                                                       
Query: 481 acctgaaattacccaatctcttataggtgtccagcagacttcatcaaatacttctagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  acctgaaattacccaatctcttataggtgtccagcagacttcatcaaatacttctagttt 23

                                 
Query: 541 atatattttgcaatctaatata 562
           ||||||||||||||||||||||
Sbjct: 22  atatattttgcaatctaatata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)