XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTCTCCTCCCCAGGCAGCCACAGACATGTTTTCTACTATGGCTTTATGT
TTGCCAGAATGACATAAAAATGAAGCCATGGTATCCTTTTATAAGCCCAC
TTTTTAAGACATAACTGTGAAGGGGCTGGAGAGATGGCCCAGTGGCCTAG
AACTCTGGGACTCACAGAGTAGCCCAGGCTGGCCTAGAACTTAGAGCAAT
CTACCTGCATCACTGTCCCATACTGGAGTATAGTCATGAACCACCAAGTC
TATCTAGAAGCGGTCTTGATGGTTCAATAGCCACCTCAACTACCACTCTC
GCCCCTATCCTCCTCCTGAGCTGGTTGCTGGGGTCTTTTGCCTCTTGCTT
CTCAGCCTGGTCCACTGCTCTCAGCAGCCAGGCCCTGCTGCCTCCCATGG
TGCAGGCTCTATAGATGTGTGAGTGCCCAGGGAGATGCTGTCACTCTTCC
CAGATCCCTACATCCCCTCTCATCCCCATGCTCTACAAATCTCTCTAATC
CCAGTATGTTCTTAATCTCCTAGCCTGCCTCTGCAGTGGTGGGGCAGTGT
CTTTGCAAATATCCAGTCTGCATTTCCAGTCAGATAAATCTAAGCCACCG
TTTTCTCTTTCTTCTGGGTTTTGGGCTAGCAATCTACGTTTTGAC

TCTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCAGTCCCACCTGGGTTTACCGCAGATAGTGCA
TACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATATCTTCCCTTTTTTCCCTTCTCTCCCT
TCTCCTCCCTCCCTTTCTTCTCTCTTCCTCTCCTTTCTTCCTTTCCCCCC
TCTCTTTCCCTCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTCCCTCCCC
CCCCCCCCCTCTTTTTCTTCCTCCTCCCCCCCTCCCCCCTCCTTTCTCTT
TCCTTCTTCCCTCCCCCCCCCCCCTCTCTTCTCCTCCCCCCCCTCTCCCT
CCCCTTTCTCCTCCCCCCCTCCCCCCCCCTCTCTCCTCCCCCCTCCCCCC
CCCCCCCCCCCTCTTCCTCCCCCCCTCCCCTCCTTTCCCCTCTCCCCCCT
CCCCCCTCTTCCCCTCTCCTCTCTCTCTCCCCCCCTCCCTCTCTTCCTCC
TCCCCCCCCCCCCCCTTTCCTCTCCCCTTCCTCCTTCTTCCCCTCTCCCC
TTTCCCTCTCCCTCCCTCCCCCCCTCCCCCCCTCTCCCCTTCCTTCCCCT
TCTCCTCCTCCCTCTTCCCCCCCCCTCCCCCCTCCTTTTCTCTTCCCCTC
CTTCTCTTTCTCCCCTCTCCCCCTTTTCCCTCTCCCCCCCCCCCCCCTCC
CT

Query= MSMg01no081_a14.b1 MSMg01no081_a14.b1 CHROMAT_FILE:
MSMg01no081_a14.b1 PHD_FILE: MSMg01no081_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:07 2005
         (569 letters)



>mm_chr4_86512452_86513420
          Length = 969

 Score =  948 bits (490), Expect = 0.0
 Identities = 540/558 (96%), Gaps = 4/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccctctcctccccaggcagccacagacatgttttctactatggctttatgtttgccagaa 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccctctcctccccaggcagccacagacatgttttctactatggctttatgtttgccagaa 269

                                                                       
Query: 70  tgacataaaaatgaagccatggtatccttttataagcccactttttaagacataactgtg 129
           |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 270 tgacataaaaatgaagccttggcagccttttataagcccactttttaagacataactgtg 329

                                                                       
Query: 130 aaggggctggagagatggcccagtggcctagaactctgggactcacagagtagcccaggc 189
            |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 330 gaggggctggaaagatggcccagtggcctagaactctgggtctcacagagtagcccaggc 389

                                                                       
Query: 190 tggcctagaacttagagcaatctacctgcatcactgtcccatactggagtatagtcatga 249
           ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 390 tggcctagaacttagggcagtctacctgcatcattgtcccatactggagtatagt-atga 448

                                                                       
Query: 250 accaccaagtctatctagaagcggtcttgatggttcaatagccacctcaactaccactct 309
           ||||   ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 449 acca---agtctatctagaagcggtcttgatggttcaacagccacctcgactaccactct 505

                                                                       
Query: 310 cgcccctatcctcctcctgagctggttgctggggtcttttgcctcttgcttctcagcctg 369
           | ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cacccccgtcctcctcctgagctggttgctggggtcttttgcctcttgcttctcagcctg 565

                                                                       
Query: 370 gtccactgctctcagcagccaggccctgctgcctcccatggtgcaggctctatagatgtg 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtccactgctctcagcagccaggccctgctgcctcccatggtgcaggctctatagatgtg 625

                                                                       
Query: 430 tgagtgcccagggagatgctgtcactcttcccagatccctacatcccctctcatccccat 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgagtgcccagggagatgctgtcactcttcccagatccctacatcccctctcatccccat 685

                                                                       
Query: 490 gctctacaaatctctctaatcccagtatgttcttaatctcctagcctgcctctgcagtgg 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gctctacaaatctctctaatcccagtatgttcttaatctcctagcctgcctctgcagtgg 745

                             
Query: 550 tggggcagtgtctttgca 567
           ||||||||||||||||||
Sbjct: 746 tggggcagtgtctttgca 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)