BAC Information

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BAC

Clone NameMSMg01-081F04
Chromosome4 (Build37)
Map Location 5,368,537 - 5,368,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081F04.T7 (MSMg01no081_f04.b1)MSMg01-081F04.TJ (MSMg01no081_f04.g1)
ACCAG301952AG301953
length742770
length of high quality
(start - end)
277 (46 - 322)172 (71 - 242)
definitionCHROMAT_FILE: MSMg01no081_f04.b1 PHD_FILE: MSMg01no081_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:29 2005CHROMAT_FILE: MSMg01no081_f04.g1 PHD_FILE: MSMg01no081_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACTAAACCCATCTGTTCCTCAGCTTTTTTTGTTTGGCAGGCT
TTTAATGACTGCTTCTATTTCTTTAGGGGCTAAGGGACTGTTTAGATGGT
TTATATGATCCTGATTTAATTTAGGTACTGGTGGCTGTCTAGAAAATTGT
CCATTTCATCTAGATTTTCTATTTGCTCTTGAGTATAGGATTTTGTAGTA
GGATCTGATGATATTTTAGATTTCCTTGGTTTTTATTGCTATGTCTCCCT
TTTTCATTTCTGATTTTGTTATTTTGTATATGTTTCTGTACCCTTCTGTT
AGGCTGGCTTACGGGTTTATCTATCTTGTTTTCTCAAAGTTTTGTTGATT
CTCTGCTTAGCTCCTTTTTGCGTCCCCTTGCTTGCGCCCCCTCCTGCACC
GACTATTTTCCCGACATCTACACCCCCTGGCAACATTTGTCCCCTTTTTG
TTCCTGGTACTTTCTCCCTGTTCTTGTTATTCTGTCAATTGAAAGTTTTC
TATTCATATCCTTATTTTTATATTTTTTTTAATTATTGTGATTCTATTAT
TCTCTCCAGGCGTCTCTTTGCGATCCCATCTATTTTCTTACCATTGTTTA
TTATCAGTATGGTCCCCCTCGGCCTCTGTAATGCGTCTACGCTGCTTTCG
CCTCCCAAACCCTCAACCACCATTCTTTTTCTTCTTATCTAG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGAAAAATCCACAAGTAAGCACTGCCTT
ATTGACATTAGAAAGGGCTCTTTATTATGAGAAAGTGGCCTACTGAGAGG
AGAGGATAAGGGACTTAGCTATAGATTACATCAGAAGAGTTTAGCCAAAG
ACTTACACAAAGAAACCCCATTCCAGACTTGGCGGAGCTCCACACAAAAG
GCTACACTTTTTCAGTGTTCTCCTATGTTGGGTGTCTGGTTTTTCCCATG
CTACCAAAGCAGCAAAACCTGCCATCTTCGCCTTGCTAATGACAACAGCC
CACACTCTCGCTTATGTTATTGTATGAATCATATAGTTCTTTTCATATAA
TTATTTGTGGTCTAATCTCTATGACTTTGACAACGATTCCTTATGCTGCC
CGGTGGCGTCCGTCCGATCGCGCTCGGGCGTCCTTCCGTGGGTTGGGGAC
GCAACGGGTTGGTTGTTTGTGTCGTAATAGCTGATGCGCACTATACATAC
TTTATCTTATATTACTTATCTATTCCTTCCACCTATCGTACCTTGCCCTT
CTCCACCAGATCTTGCCCCCATTTCTAAATTCATGTTTGCTTTTGTCTCT
CCCTTCTCGCTCACCCTCTCTCACCATTTATCCACGCATAACCCATATTT
TCGCATCCCAATTACACCATAATCTCTTATCTATCAACCTCTTCCCTCCA
CTTCATTCCTATTACCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_f04.g1 MSMg01no081_f04.g1 CHROMAT_FILE:
MSMg01no081_f04.g1 PHD_FILE: MSMg01no081_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:29 2005
         (172 letters)



>mm_chr4_5368337_5368908
          Length = 572

 Score =  333 bits (172), Expect = 4e-96
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaaaaatccacaagtaagcactgccttattgacattagaaagggctctttattatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaaaaatccacaagtaagcactgccttattgacattagaaagggctctttattatga 260

                                                                       
Query: 61  gaaagtggcctactgagaggagaggataagggacttagctatagattacatcagaagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagtggcctactgagaggagaggataagggacttagctatagattacatcagaagagt 320

                                                               
Query: 121 ttagccaaagacttacacaaagaaaccccattccagacttggcggagctcca 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagccaaagacttacacaaagaaaccccattccagacttggcggagctcca 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)