Query= MSMg01no081_g14.b1 MSMg01no081_g14.b1 CHROMAT_FILE:
MSMg01no081_g14.b1 PHD_FILE: MSMg01no081_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:36 2005
(502 letters)
>mm_chr4_84137116_84138013
Length = 898
Score = 928 bits (480), Expect = 0.0
Identities = 495/502 (98%), Gaps = 4/502 (0%)
Strand = Plus / Minus
Query: 1 caataatgtttcaagatgtgatttcagcagaggcctaagtcactgaactaatcgcaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caataatgtttcaagatgtgatttcagcagaggcctaagtcactgaactaatcgcaactt 639
Query: 61 ggataggtttaaaatgatttaaaacacatcttgtggtttttaaatatgtttacttctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggataggtttaaaatgatttaaaacacatcttgtggtttttaaatatgtttacttctctc 579
Query: 121 acttacttatgtaccaataggccccgtgatcacgtgggctcagggcagcagccctgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ----acttatgtaccaataggccccgtgatcacgtgggctcagggcagcagccctgtttg 523
Query: 181 atggagaatgtatggactgtgtaacacccacagactatggtctcaggctgtccttgatat 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atggagaatgtatggactatgtaacacccacagactatggtctcaggctgtccttgatat 463
Query: 241 tcctcatctacaggtcatagggtatggtgatgtcaaagctttctgaatgaacagtctgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcctcatctacaggtcatagggtatggtgatgtcaaagctttctgaatgaacagtctgac 403
Query: 301 cttttgctgtgggattggcaacacaaggctgcattgaagtaagctggtatttccaaggca 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttttgctgtggggttggcaacacaaggctgcattgaagtaagctggtatttccaaggca 343
Query: 361 gcgcttccatgtgaaatgaggataggcagctctgaggaactgtgttgtgaccctaggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcgcttccatgtgaaatgaggataggcagctctgaggaactgtgttgtgaccctaggaag 283
Query: 421 agtcaggtttagtcatatttgtctgccttgtctcagaaacgtgtgcacatgctgaatgaa 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtcaggtttagtcatatttctctgccttgtctcagaaacgtgtgcacatgctgaatgaa 223
Query: 481 tgtgacaaatactgtttttgca 502
||||||||||||||||||||||
Sbjct: 222 tgtgacaaatactgtttttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 898
Length adjustment: 10
Effective length of query: 492
Effective length of database: 888
Effective search space: 436896
Effective search space used: 436896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_g14.g1 MSMg01no081_g14.g1 CHROMAT_FILE:
MSMg01no081_g14.g1 PHD_FILE: MSMg01no081_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:36 2005
(519 letters)
>mm_chr4_84002238_84003148
Length = 911
Score = 946 bits (489), Expect = 0.0
Identities = 507/517 (98%), Gaps = 8/517 (1%)
Strand = Plus / Plus
Query: 1 atgtcattagctgcagagaaaagagtgtggcgatccgagagggaatcacatcagatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtcattagctgcagagaaaagagtgtggcgatccgagagggaatcacatcagatcctg 260
Query: 61 gaagtgggcagtctgtggctgtcagcagtgtgcaatggagctgcttcaaagcccaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtgggcagtctgtggctgtcagcagtgtgcaatggagctgcttcaaagcccaggctg 320
Query: 121 tgacccgaatgctgtacatccctgtgcccggggagagaggatcaatgcctgtgtttgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacccgaatgctgtacatccctgtgcccggggagagaggatcaatgcctgtgtttgctg 380
Query: 181 agctctagtcatcccctcggctagaaaaagctacgttgaaaggcatgctaaggggcctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctctagtcatcccctcggctagaaaaagctacgttgaaaggcatgctaaggggcctct 440
Query: 241 gggcagcctgcagcctggtgttagcagagtttgttccatagcttggtgggtgaacgcata 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 441 gggcagcctgcagcctggtgttagcagagtttgttccacagcttggtgggtgaatgcata 500
Query: 301 gacaccaaagcctagctcaccttcacatatacaagtgccccccccccccacacacacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 501 gacaccaaagcctagctcaccttcacatatacaagtgcccccccccccc-c-------ca 552
Query: 361 catcccttcattctatcccatcaactcccctctggctgtctgtttagtgtcactcagttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catcccttcattctatcccatcaactcccctctggctgtctgtttagtgtcactcagttg 612
Query: 421 ggatggatcctgttaaagatctgacgcttggtgaggagtctaaggtgtctggaccgtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggatggatcctgttaaagatctgacgcttggtgaggagtctaaggtgtctggaccgtctg 672
Query: 481 cctctaatcataaacaccacagctggcaatgatgtgg 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 673 cctctaatcataaacaccacagctggcaatgatgtgg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 911
Length adjustment: 10
Effective length of query: 509
Effective length of database: 901
Effective search space: 458609
Effective search space used: 458609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
