Query= MSMg01no082_a10.b1 MSMg01no082_a10.b1 CHROMAT_FILE:
MSMg01no082_a10.b1 PHD_FILE: MSMg01no082_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:25 2005
(401 letters)
>mm_chr4_108267368_108268168
Length = 801
Score = 702 bits (363), Expect = 0.0
Identities = 394/409 (96%), Gaps = 8/409 (1%)
Strand = Plus / Plus
Query: 1 agttaggatcagaatttacaggagaccctgtctcatagtaaagcctatgagagagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaggatcagaatttacaggagaccctgtctcatagtaaagcctatgagagagaaaaa 260
Query: 61 gaataatttgctgggcatggtggtccacaggagggaggggctggcagttctttgagttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 261 gaataatttgctgggcatggtggtccacaggagggaggggctggcagttctctaagttgg 320
Query: 121 aggcaggccagggctacatagaaagacactgtctcacaatcaaaatacgaataatttaca 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aggcaggccagggctacatagaaagacactgtctcaaaatcaaaatacgaataatttaca 380
Query: 181 tttcatcgaaatccttgaactattcatggctttttaaatgctcagtttctcagtcagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcatcgaaatccttgaactattcatggctttttaaatgctcagtttctcagtcagtgt 440
Query: 241 gctgtacagtgtctgcctcatttcatataaagatgggaggttaaatagttttcactgcac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtacagtgtctgcctcatttcatataaagatgggaggttaaatagttttcactgcag 500
Query: 301 ccatgatagt--------gctgtgtagtcttcacattttcttgttcatctcatctctgaa 352
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ccatgatagtctttcttagctgtgtagtcttcacattttcttgttcatctcatttctgaa 560
Query: 353 attcaggtagtggcattagccccagaacaagtgattcctgtgaatcaga 401
||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 561 attcaggtagtggcattagccccagaagaagtgattcctgtggatcaga 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_a10.g1 MSMg01no082_a10.g1 CHROMAT_FILE:
MSMg01no082_a10.g1 PHD_FILE: MSMg01no082_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:25 2005
(483 letters)
>mm_chr4_108455499_108456382
Length = 884
Score = 832 bits (430), Expect = 0.0
Identities = 456/466 (97%), Gaps = 3/466 (0%)
Strand = Plus / Minus
Query: 1 tacaggggggg---gttaagctatactttaaagtcatcggagagtggtggaaatcaatgc 57
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tacagggggggggcgttaagctatactttaaagtcatcggagagtggtggaaatcaatgc 407
Query: 58 aaacagaaagtggcagaatcaagacaactgacttcgagttgaagtggtttgaaacagaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaacagaaagtggcagaatcaagacaactgacttcgagttgaagtggtttgaaacagaaa 347
Query: 118 gagatcttaggcagaagaaaggaggcaggtgagagataggtcaggagttgagagtaagat 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 gagatcttaggcagaagaaaggaggcaggtgagagataggtcaggagctgagagtaagat 287
Query: 178 gaggaagcaggaggggaaacattcttggatgaaataggagcagacaaaaggagacctact 237
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 gaggaagcaggaggggaaacagtcttggatgaaatgggagcagacaaaaggagacctact 227
Query: 238 gtgggtgcatgcatgcctcctgggtagttggttctctccttctatcttggggttccagag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtgggtgcatgcatgcctcctgggtagttggttctctccttctatcttggggttccagag 167
Query: 298 ataaaactcagatcactaggtgtggccctttacccactgagccatctggccagcatatga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ataaaactcagatcactaggtgtggccctttacccactgagccatctggccagcatatga 107
Query: 358 cagaaggattttaagcaggttactatcaagcagcctccctcagcaagagtttgaatagaa 417
||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 106 cagaacgattttaagcaagttactatcaagcagcttccctcagcaagagtttgaatagaa 47
Query: 418 gggaagaatgtgtgaggcaagaagaaactggtcctgggaacaaatg 463
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 46 gggaagaacgtgtgaggcaagaagaaactggtcctgggaacaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
