BAC Information

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BAC

Clone NameMSMg01-082C17
Chromosome4 (Build37)
Map Location 75,708,922 - 75,709,480
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082C17.T7 (MSMg01no082_c17.b1)MSMg01-082C17.TJ (MSMg01no082_c17.g1)
ACCAG302601AG302602
length670732
length of high quality
(start - end)
553 (67 - 619)43 (94 - 136)
definitionCHROMAT_FILE: MSMg01no082_c17.b1 PHD_FILE: MSMg01no082_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:34 2005CHROMAT_FILE: MSMg01no082_c17.g1 PHD_FILE: MSMg01no082_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATCTTAACAACACTGGATAAGAACAGAACAATTTTATTTAGTAATTC
ATTTCTTACTTAATGACCTTCATGAGATTCTGTTTTTAAAGATTGTGTAC
ATATATTTTGTTTTGTGAGATGAAAGTAAATTCCTGGAAGATTTGGGGTA
TATATGCTATTTGTGTTTATTTGTTCAAAGTGGCTACCATTCTACATTGT
ATTTAGAAAGTTCTCAGCAAAGTTTTGCTGAATAAAGTAAATGAGACAAC
AACAACGATAACAACAACAACAACAACAACATCCGCTCATATTTTCAAGA
GGCTGAGAATGCTAAGACCGGAATGGATATAATTTGTTTAAGATAAGCAA
ATTTAGTTAAGTTTTTAACCTCCATTTTTGGTGAACATGCCTTAAGGCAC
ATATTTTGAAGTCTAGTACAAGACCAACAGACCAGCAGAGAACATGCTCC
ACGTCATACCTGAACTTTACTGTTGCTTTCTATTTTATTTACTTCTCAGA
ACAGAGGTTAAAATGACTGTCAAGATTTTCTATGTATCACACAGATGAAA
ACTCAGTATATTTTTTGATCTTTCTGAGATGTAACTGAAAGCCCGAGAGA
GAGCAAGGAGGAAGTCTTGT
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTTCTCCGCGCAATTCAGCATTGGATTGACCAAGGGAAGAGCACTGT
ACTGGAGAGACTGAGGGAGGAGGATTGCTGTGGCGGAGGGGGGAGGATTG
CTCGCCTCTTTCTCTCCCCCCCCCTCCTCCCCTCCCCTTCTTCCTCTTCC
TCCTCCCCCTTCTCTCTCCTCCCTCCCCCTTTCTTCCCCTTTCTCTTTTT
TCTTCTTTTTCTTTTCTTTCCTTTTTTCTCTCTTTCCTCCCCCTCTTTTC
CTTTTTCTTTTCTTTTTTTCCCCCCTCCCCCCCCCCCCCCTCCCCTCTTT
TTTTTTTTTTTCCCCCCCTCTCCTTATTTTTTTTTTCTTTTCTTTTCCCC
TCCCTCCCTCCCCCCCCCCCCTCCTTCTCTTTTCTCCCCCCCCTCTTTTT
CTTCTCTCCCCTTTCTCCTCCCCCTCTTCTCTCCCCTTCTTCTCCTCCTT
TCCTTTTCCCTCCCCTTCTTCCTTCCCCCCTTTCTCTCCCTCCCTCTCTC
TCCTTTTCCTCCCCTTCTTCTTCCCTCCCCCTTTTCCCTCTCCTTCTCTT
TCTCCTCTTTTCTTCTCTCTCCCCTTTTTTCCCTTCCTTCCTTCTTCCTT
CCCCCTCCTCTCCCCCCCTCTCCTTTTCTTTTTCTTCTTTTTCCTTTTCT
CTCTTCTTTCCTTTTTTTTCTTTCTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_c17.b1 MSMg01no082_c17.b1 CHROMAT_FILE:
MSMg01no082_c17.b1 PHD_FILE: MSMg01no082_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:34 2005
         (553 letters)



>mm_chr4_75708728_75709680
          Length = 953

 Score = 1015 bits (525), Expect = 0.0
 Identities = 548/559 (98%), Gaps = 6/559 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggataagaacagaacaattttatttagtaattcatttcttacttaatgaccttcatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggataagaacagaacaattttatttagtaattcatttcttacttaatgaccttcatgag 254

                                                                       
Query: 61  attctgtttttaaagattgtgtacatatattttgttttgtgagatgaaagtaaattcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attctgtttttaaagattgtgtacatatattttgttttgtgagatgaaagtaaattcctg 314

                                                                       
Query: 121 gaagatttggggtatatatgctatttgtgtttatttgttcaaagtggctaccattctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaagatttggggtatatatgctatttgtgtttatttgttcaaagtggctaccattctaca 374

                                                                       
Query: 181 ttgtatttagaaagttctcagcaaagttttgctgaataaagtaaatgagacaacaacaac 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgtatttagaaagttctcagcaaatttttgctgaataaagtaaatgagacaacaacaac 434

                                                                       
Query: 241 gat------aacaacaacaacaacaacaacatccgctcatattttcaagaggctgagaat 294
           |||      |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 gataacaacaacaacaacaacaacaacaacaaccgctcatattttcaagaggctgagaat 494

                                                                       
Query: 295 gctaagaccggaatggatataatttgtttaagataagcaaatttagttaagtttttaacc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctaagaccggaatggatataatttgtttaagataagcaaatttagttaagtttttaacc 554

                                                                       
Query: 355 tccatttttggtgaacatgccttaaggcacatattttgaagtctagtacaagaccaacag 414
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tccatttttgatgaacatgccttaaggcacatattttgaagtctagtacaagaccaacag 614

                                                                       
Query: 415 accagcagagaacatgctccacgtcatacctgaactttactgttgctttctattttattt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 accagcagagaacatgctccacgtcatacctgaactttactgttgctttctattttattt 674

                                                                       
Query: 475 acttctcagaacagaggttaaaatgactgtcaagattttctatgtatcacacagatgaaa 534
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 675 acttctcagaacagaggttaaaatgactttcaagattttctatgtatcaaacagatgaaa 734

                              
Query: 535 actcagtatattttttgat 553
           |||||||||||||||||||
Sbjct: 735 actcagtatattttttgat 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)