BAC Information

Click to search

BAC

Clone NameMSMg01-082O19
Chromosome4 (Build37)
Map Location 152,273,802 - 152,428,588
singlet/doubletdoublet
Overlap genenone
Upstream geneDnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O19.T7 (MSMg01no082_o19.b1)MSMg01-082O19.TJ (MSMg01no082_o19.g1)
ACCAG303178AG303179
length684684
length of high quality
(start - end)
275 (65 - 339)374 (70 - 443)
definitionCHROMAT_FILE: MSMg01no082_o19.b1 PHD_FILE: MSMg01no082_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:31 2005CHROMAT_FILE: MSMg01no082_o19.g1 PHD_FILE: MSMg01no082_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,428,314 - 152,428,588)(152,273,802 - 152,274,175)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCAGTACAGGGTTCCTCTTCACAGGTGACCCTAGCTTGTGTCGAGTTG
ACAAACCCCAATCGGCACATAAACATTGGATTGTAGCAGGTCCGGCAGGT
GACCTGCAGATGGTTTAAAGTGCATGAGAGAACGTGCCAAGGTTCTGTAT
AGTCATGGCACTTGACCATCTGCTGGTCTCAGTTTTTCTGGGAGTTGTTA
AAGGTGTTGGCATTTGACTCATCTGTACAAGGGGGCATTCCGGTGCTCCC
GAGACTCCATTTGCATCTTGTCATTCATCCATGCTGCCAACTGAAGACTG
CTTCGCATCACACACCACATACATGTTGTACTAGGGACAGATCTCAGGCC
ACACGGAGATGCGGTGGTAGGTCCGATGCCTATAAAATCCACCAAGAAGC
TCATCACGAAACTAGACATCCTGTGGAGAATAGGCAGAAAGTGGCAGCCG
GTTGGCTGAGCGCCCGTCTGCCATAAGGTCGTTGTGCTTTTAGCAACAGC
TGGATATGACATGCTCCTGGCCCCCTTGTTATATATAAATTCCAAGCTGA
GCTTTCTGTGTTTCTTTACCCCTGAAATGCGCTTAGCTCTTATTCCCACT
GTATTAACATTTGACCGAATGCCCTCCCCAGCCN
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTACACAGCTTAAGAAAGACTGGACTCCAC
TCAGCCGTACTTCAAAAACACCGAAGACAGATCTACAGAAATTGTCTAAA
GTGAAATTCAGAGAGATCTGTAAGGAGGTAAAAGGAAGGGCTCGGGGTTC
CATAGATAGGATTAAGTGGTCGACAGCCTGTGAGTTTAAAGCTGGGGAAG
GAAGGGGAAAATGGAGCAGAAGGAATCAGAAGAGAGGGAGAGGCAGAGAG
CCTTCCAGCATGGTTGAGCGTTGATAGCCCACAGATTGAGAAGCCCAGTA
GATAGAGAGGAAAAAGAAAACCACACTCACAGTCTAAGATTCAAGCTGAT
GAGCCTCTGGCATAAAGATGGAATCTCTAATCCCAAGAGAGACAAAGAGA
CACTCTGAATGCAGGAGATGGATGTGAATTGGGGTTGATTTCTCACGGTA
GAAGCCCAGAATATAGCATAATGACATCTTTTAAGTGGTCGAGAGGCACA
AAAGCCTGTCTATCCAGAATTATGCATTTAGAGACTGTAGGCTTCAGATT
CTGAGGCTTATTTATGATTCTGCGTTCTTTTTCTATGGAGATAAAGTTGA
TATATTTTATCATCTATAGCCTTATATTAGATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o19.b1 MSMg01no082_o19.b1 CHROMAT_FILE:
MSMg01no082_o19.b1 PHD_FILE: MSMg01no082_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:31 2005
         (275 letters)



>mm_chr4_152428056_152428730
          Length = 675

 Score =  493 bits (255), Expect = e-144
 Identities = 270/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcttcacaggtgaccctagcttgtgtcgagttgacaaaccccaatcggcacataaac 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 533 tcctcttcacaggtgaccctagcttgcgtcgagttgacaaaccccaatcggcacatagac 474

                                                                       
Query: 61  attggattgtagcaggtccggcaggtgacctgcagatggtttaaagtgcatgagagaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 attggattgtagcaggtccggcaggtgacctgcagatggtttaaagtgcatgagagaacg 414

                                                                       
Query: 121 tgccaaggttctgtatagtcatggcacttgaccatctgctggtctcagtttttctgggag 180
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgccaaggttctgtacagtcattgcacttgaccatctgctggtctcagtttttctgggag 354

                                                                       
Query: 181 ttgttaaaggtgttggcatttgactcatctgtacaagggggcattccggtgctcccgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 353 ttgttaaaggtgttggcatttgactcatctgtacaagggggcattccagtgctcccgaga 294

                                              
Query: 241 ctccatttgcatcttgtcattcatccatgctgcca 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 293 ctccatttgcatcttgtcattcatccatgctgcca 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no082_o19.g1 MSMg01no082_o19.g1 CHROMAT_FILE:
MSMg01no082_o19.g1 PHD_FILE: MSMg01no082_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:31 2005
         (374 letters)



>mm_chr4_152273602_152274375
          Length = 774

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacacagcttaagaaagactggactccactcagccgtacttcaaaaacaccgaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacacagcttaagaaagactggactccactcagccgtacttcaaaaacaccgaagaca 260

                                                                       
Query: 61  gatctacagaaattgtctaaagtgaaattcagagagatctgtaaggaggtaaaaggaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctacagaaattgtctaaagtgaaattcagagagatctgtaaggaggtaaaaggaagg 320

                                                                       
Query: 121 gctcggggttccatagataggattaagtggtcgacagcctgtgagtttaaagctggggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcggggttccatagataggattaagtggtcgacagcctgtgagtttaaagctggggaa 380

                                                                       
Query: 181 ggaaggggaaaatggagcagaaggaatcagaagagagggagaggcagagagccttccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggggaaaatggagcagaaggaatcagaagagagggagaggcagagagccttccagc 440

                                                                       
Query: 241 atggttgagcgttgatagcccacagattgagaagcccagtagatagagaggaaaaagaaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggtgagcgttgatagcccacagattgagaagcccagtagatagagaggaaaaagaaa 500

                                                                       
Query: 301 accacactcacagtctaagattcaagctgatgagcctctggcataaagatggaatctcta 360
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 accacactcacagcctaagattcaagctgatgagcctctgggataaagatggaatctcta 560

                         
Query: 361 atcccaagagagac 374
           ||||||||||||||
Sbjct: 561 atcccaagagagac 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)